Alignments for a candidate for gatB in Thiohalospira halophila HL 3

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_093428566.1 BM272_RS09590 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_900112605.1:WP_093428566.1
          Length = 479

 Score =  456 bits (1174), Expect = e-133
 Identities = 230/477 (48%), Positives = 327/477 (68%), Gaps = 4/477 (0%)

Query: 1   MNFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAM 60
           M +ET+IGLE+H +L T++KIFS + T +GAE NTQ   IDL  PGVLPVLN EAV  A+
Sbjct: 1   MEWETIIGLEIHTQLATQTKIFSGASTAYGAEPNTQACAIDLAMPGVLPVLNHEAVRMAV 60

Query: 61  KAAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEVGG--KTKRIGI 118
           K  +A+  EIA  + F RKNYFY D PK YQISQ++ P+  +G + IE  G  + K IGI
Sbjct: 61  KLGLAIGAEIAPTSVFARKNYFYADLPKGYQISQYELPVVRHGEMAIEPEGADEAKTIGI 120

Query: 119 TRLHLEEDAGKLTHTG-DGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQY 177
           TR HLEEDAGK  H    G S +D NR GTPL+EIVSEPD+RT  EA AY  KL +++QY
Sbjct: 121 TRAHLEEDAGKSLHEDFHGMSGIDLNRAGTPLLEIVSEPDMRTAREASAYARKLHALVQY 180

Query: 178 TGVSDCKMEEGSLRCDANISLRPIGQEEFGTKTELKNLNSFAFVQKGLEHEEKRQEQVLL 237
             + D  M+EGS R DAN+S+RP+G+  FGT+TE+KN+NSF F+++ ++ E +RQ  VL 
Sbjct: 181 LEICDGNMQEGSFRMDANVSVRPVGEHRFGTRTEIKNVNSFRFLERAIDFEVERQIDVLE 240

Query: 238 SGFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELP 297
            G  + QETR YD A  +T  MR KE + DYRYFP+PDL+ L ID  + +  ++++PELP
Sbjct: 241 GGGRVVQETRLYDAAKDETRSMRSKEEATDYRYFPDPDLLPLAIDQAFVDEARSALPELP 300

Query: 298 DERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQK-GAEAKQASNWLMGEVSAYLNAE 356
           D +R R++ + G + YDA VLT T+ +AD++E  V   G + K  +NW+ GE++A +N +
Sbjct: 301 DAKRDRFMADYGLSRYDAAVLTDTRALADYYEAVVAAVGDDPKLCANWVTGELAAAMNRD 360

Query: 357 QKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKGLVQISDE 416
             ++    ++ EGLAG++  I+  TIS KIAK+VF+ +    GDA+ +++ +GL QI+D 
Sbjct: 361 DLDITASPVSAEGLAGLLNRIQDETISGKIAKEVFEAMWAGEGDADTVIEARGLKQITDT 420

Query: 417 GVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEI 473
             +  ++ E +  NP+ +E ++ GKD+ +GF VGQ+MKAS G+ANP  VN+ L E++
Sbjct: 421 SAIDAVIDEVMAANPEQVEAYRGGKDKLMGFFVGQVMKASGGKANPQQVNERLKEKL 477


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 615
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 479
Length adjustment: 34
Effective length of query: 442
Effective length of database: 445
Effective search space:   196690
Effective search space used:   196690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_093428566.1 BM272_RS09590 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.25316.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25316.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.