Alignments for a candidate for aroG in Trichormus variabilis ATCC 29413

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_104009967.1 AVA_RS20175 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::Q9WYH8
         (338 letters)



>NCBI__GCF_000204075.1:WP_104009967.1
          Length = 362

 Score =  310 bits (795), Expect = 3e-89
 Identities = 165/342 (48%), Positives = 227/342 (66%), Gaps = 8/342 (2%)

Query: 1   MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLD-CV 59
           MI+V+KP +   +I +V +    + L   I  G  + VIG++GD   +   + ++L+  +
Sbjct: 1   MIIVMKPFTPSAEIEQVNEEIRRHELTPEICVGHHKVVIGLVGDTSELDPRQIQNLNPFI 60

Query: 60  ESVVRVLKPYKLVSREF----HPEDTV-IDLGDVKIGNGY-FTIIAGPCSVEGREMLMET 113
           E V+R+ KP+K  S EF    H E  V    G +  G  +   ++AGPCSVE  EM++ET
Sbjct: 61  EQVIRIKKPFKRASLEFRYGEHSEVVVPTPNGPITFGQNHPVVVVAGPCSVENEEMIVET 120

Query: 114 AHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPK 173
           A  + E G + LRGGAYKPRTSPY+FQG GE  L  L +A +  G+ ++TE +  DDL K
Sbjct: 121 AQAVKEYGAQFLRGGAYKPRTSPYAFQGHGESALALLAKAKEATGLGIITEIMDADDLDK 180

Query: 174 VAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKII 233
           + E AD++QIGARN QNF LL K G+  KPVLLKRG   TIE++L+SAEYI   GN  +I
Sbjct: 181 LIEVADVLQIGARNMQNFSLLKKIGATTKPVLLKRGLSATIEDWLMSAEYILAGGNPNVI 240

Query: 234 LCERGIRTFEKA-TRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGA 292
           LCERGIRTF++  TRNTLDISA+P++R  +HLPI++DPSH+ G+ + V  ++ A+IA GA
Sbjct: 241 LCERGIRTFDRQFTRNTLDISAIPVLRTLTHLPIMIDPSHATGKSEFVPTMTMASIAAGA 300

Query: 293 HGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALG 334
             +++EVHP P KALSDG QSL  E FKEL+ E+  L+   G
Sbjct: 301 DSLMIEVHPNPAKALSDGPQSLTLEGFKELMHEITALSKFFG 342


Lambda     K      H
   0.318    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 316
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 362
Length adjustment: 29
Effective length of query: 309
Effective length of database: 333
Effective search space:   102897
Effective search space used:   102897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_104009967.1 AVA_RS20175 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR01361 (aroF: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.14274.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14274.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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