Alignments for a candidate for ilvI in Methanospirillum lacunae Ki8-1

Align acetohydroxy-acid synthase large subunit (EC 2.2.1.6) (characterized)
to candidate WP_109966898.1 DK846_RS00145 biosynthetic-type acetolactate synthase large subunit

Query= metacyc::MONOMER-11900
         (599 letters)



>NCBI__GCF_003173355.1:WP_109966898.1
          Length = 563

 Score =  582 bits (1501), Expect = e-170
 Identities = 301/580 (51%), Positives = 400/580 (68%), Gaps = 21/580 (3%)

Query: 2   NGAEAMIKALEAEKVEILFGYPGGALLPFYDALHHSDLIHLLTRHEQAAAHAADGYARAS 61
           +GA+ +I+ L+ + V+++FGYPGG +LP YD L+ +D+ H+L RHEQAA HAADGYARA+
Sbjct: 3   SGAQILIEGLKEQGVDVIFGYPGGVVLPIYDELYDADIRHILVRHEQAAIHAADGYARAT 62

Query: 62  GKVGVCIGTSGPGATNLVTGVATAHSDSSPMVALTGQVPTKLIGNDAFQEIDALGLFMPI 121
           GKVGVC+ TSGPGA NLVTG+ATA+ DS P+VALTGQVPT L+GNDAFQE D  G+ MP+
Sbjct: 63  GKVGVCLATSGPGACNLVTGLATAYMDSIPVVALTGQVPTGLLGNDAFQESDITGITMPV 122

Query: 122 VKHNFQIQKTCQIPEIFRSAFEIAQTGRPGPVHIDLPKDVQELELDIDKHPIPSKVKLIG 181
            KHNF +Q    +  I R AF IA TGR GPV ID+PKDV   ++  +  P   ++KL G
Sbjct: 123 TKHNFLVQDVKDLKRIIREAFYIANTGRKGPVLIDIPKDVSTTKIPDEDGP-DQQIKLRG 181

Query: 182 YNPTTIGHPRQIKKAIKLIASAKRPIILAGGGVLLSGANEELLKLVELLNIPVCTTLMGK 241
           Y PT  GH +QI+KA++LI +AKRPII AGGGV+ S A++EL++  E   +PV TTLMG 
Sbjct: 182 YKPTYQGHGKQIQKAVELIEAAKRPIIYAGGGVISSEASKELVEFAERTCMPVTTTLMGL 241

Query: 242 GCISENHPLALGMVGMHGTKPANYCLSESDVLISIGCRFSDRITGDIKSFATNAKIIHID 301
           GCI  +HPL LGM+GMHGT+ ANY ++ESD+L SIG RF DR+TG++ +FA NAKIIH+D
Sbjct: 242 GCIPADHPLNLGMLGMHGTEYANYAITESDLLFSIGVRFDDRVTGNLATFAPNAKIIHMD 301

Query: 302 IDPAEIGKNVNVDVPIVGDAKLILKEVIKQLDYIINKDSKENNDKENISQWIENVNSLKK 361
           IDPAEIGKN  VD+PIVGDAK IL +++K++    +             +W E V + KK
Sbjct: 302 IDPAEIGKNKPVDIPIVGDAKNILTDLLKRIPATCSH-----------PEWSEKVQNWKK 350

Query: 362 SSIPVMDYDDIPIKPQKIVKELMAVIDDLNINKNTIITTDVGQNQMWMAHYFKTQTPRSF 421
           +  P+   +D  ++PQ +++ L   + D       +I ++VGQNQMW A Y+    PR +
Sbjct: 351 NH-PLRFKEDGKLRPQYVIRRLAETLGD-----KGVIVSEVGQNQMWTAQYYPFSHPRQW 404

Query: 422 LSSGGLGTMGFGFPSAIGAKVAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVICIFD 481
           ++SGGLGTMGFGFP+A+GA+VA PD  V  I GDG F MN QELGTIA+Y IPV I I +
Sbjct: 405 ITSGGLGTMGFGFPAAMGAQVAVPDQPVFVIAGDGSFQMNIQELGTIAQYQIPVKIVILN 464

Query: 482 NRTLGMVYQWQNLFYGKRQCSVNFGGAPDFIKLAESYGIKARRIESPNEINEALKEAINC 541
           N+ LGMV QWQ LFY +R           F  +A++YGI+A  + S  +I+ A K A+NC
Sbjct: 465 NQFLGMVRQWQELFYERRYSYTELPEV-QFEHIAKAYGIEAETVRSIPDIDSAFKRALNC 523

Query: 542 DEPYLLDFAID-PSSALSMVPPGAKLTN-IIDAVQEHPNE 579
           + PYLLD  ++   +   MVP GA ++  I+    EH  E
Sbjct: 524 NGPYLLDIRVEREENVFPMVPAGAAISEMIVGQHTEHEEE 563


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 923
Number of extensions: 41
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 563
Length adjustment: 36
Effective length of query: 563
Effective length of database: 527
Effective search space:   296701
Effective search space used:   296701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_109966898.1 DK846_RS00145 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.673.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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