Alignments for a candidate for ilvH in Methanospirillum lacunae Ki8-1

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate WP_109966899.1 DK846_RS00150 acetolactate synthase small subunit

Query= BRENDA::P9WKJ3
         (168 letters)



>NCBI__GCF_003173355.1:WP_109966899.1
          Length = 167

 Score =  164 bits (416), Expect = 5e-46
 Identities = 85/156 (54%), Positives = 112/156 (71%), Gaps = 1/156 (0%)

Query: 6   HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITK 65
           H  SVLVED PGVL+RV  LFSRRGFNIESLAVG  E  D SR+TIVVS  D  +EQ+ K
Sbjct: 4   HIFSVLVEDSPGVLSRVTGLFSRRGFNIESLAVGTCEQPDTSRITIVVSGNDVQIEQVKK 63

Query: 66  QLNKLINVIKIVEQDDEHSVSRELALIKVQADAGS-RSQVIEAVNLFRANVIDVSPESLT 124
           QLNKLI VIK+++  D   V RELALIKV+A+ G  RS +++   +FRA +IDV  +SL 
Sbjct: 64  QLNKLIEVIKVLDITDLEHVERELALIKVKAEPGEVRSAIMQVAGIFRAKIIDVGTDSLM 123

Query: 125 VEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRG 160
           +E TG+  K+ A+  ++ P+GI E+ ++G ++L RG
Sbjct: 124 IEVTGDSSKIAAIEDLMSPYGIIEMVRTGKIALQRG 159


Lambda     K      H
   0.315    0.131    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 167
Length adjustment: 18
Effective length of query: 150
Effective length of database: 149
Effective search space:    22350
Effective search space used:    22350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_109966899.1 DK846_RS00150 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.24559.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24559.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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