Alignments for a candidate for argI in Methanospirillum lacunae Ki8-1

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_109967434.1 DK846_RS03100 ornithine carbamoyltransferase

Query= BRENDA::O93656
         (317 letters)



>NCBI__GCF_003173355.1:WP_109967434.1
          Length = 302

 Score =  317 bits (811), Expect = 3e-91
 Identities = 164/305 (53%), Positives = 211/305 (69%), Gaps = 8/305 (2%)

Query: 8   RDLLCLQDYTPEEIWTILETAKMLKIWQKIG--KPHRLLEGKTLAMIFQKPSTRTRVSFE 65
           +D + + D + +E+  ++ T++ LK  +++G   PH  L  KTL MIF+K STRTR+SFE
Sbjct: 3   KDFVSILDISRDELGELIATSRRLKEERRVGVFPPH--LSQKTLGMIFEKSSTRTRISFE 60

Query: 66  VAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYASVP 125
           V M  LGGHAL+LN +D+QL RGE I DTARV+SR+V AIM R   H+ V +LA +A +P
Sbjct: 61  VGMYELGGHALFLNPKDMQLGRGEAIRDTARVMSRFVSAIMIRANSHQSVTELAVHADIP 120

Query: 126 VINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVA 185
           VINGLSD  HPCQ LAD MTI E    I+ V V +VGDGNNV +SL+++    G +V +A
Sbjct: 121 VINGLSDCEHPCQILADIMTIVEHLHRIEKVTVAWVGDGNNVCNSLILSTILTGMEVRIA 180

Query: 186 TPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERR 245
            P  Y+P  + I    + A   G   EL  DP+ AV++ADV+ TD W SMG E E +ER 
Sbjct: 181 CPPQYKPSLEYI----EQARSEGAIIELGEDPIAAVQNADVVMTDTWVSMGHEEETKERE 236

Query: 246 KIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDEAENRLHAQKAV 305
           KIF P+QVN DL+ HAKP  + MHCLPAHRG E+TD+VIDS  SVVWD+AENRLH QKA+
Sbjct: 237 KIFAPYQVNMDLLSHAKPGAIVMHCLPAHRGSEITDEVIDSSRSVVWDQAENRLHVQKAL 296

Query: 306 LALLL 310
           L  LL
Sbjct: 297 LLRLL 301


Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 252
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 302
Length adjustment: 27
Effective length of query: 290
Effective length of database: 275
Effective search space:    79750
Effective search space used:    79750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_109967434.1 DK846_RS03100 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.26736.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26736.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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