Alignments for a candidate for ilvI in Methanospirillum lacunae Ki8-1

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_109968179.1 DK846_RS06810 biosynthetic-type acetolactate synthase large subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>NCBI__GCF_003173355.1:WP_109968179.1
          Length = 559

 Score =  502 bits (1292), Expect = e-146
 Identities = 273/563 (48%), Positives = 358/563 (63%), Gaps = 16/563 (2%)

Query: 21  GAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYARAT 80
           GA+IL+ +L  +GVE ++GYPG  VL IYDEL K +   HILVRHEQAA HAADGYARA 
Sbjct: 4   GAKILLDSLEFQGVETIFGYPGATVLPIYDELPK-SGIRHILVRHEQAAAHAADGYARAG 62

Query: 81  GKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGITRPI 140
           G  GV L TSGPG  N VTGIATAY+DSIP++ ITG VPT  IG  +FQE +   ITRP+
Sbjct: 63  GGAGVCLATSGPGACNLVTGIATAYMDSIPVIAITGQVPTDQIGNQSFQEANITEITRPV 122

Query: 141 VKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRSYNP 200
            K N+LV    DLA T+ +AF +A TGRPGPV++DIPKDVS      E  K I +R+   
Sbjct: 123 TKQNYLVTKTADLAKTVSQAFSVAMTGRPGPVLIDIPKDVSTGLVSEE--KQIGLRTKII 180

Query: 201 VNKGHSGQIR----KAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTLMG 256
             K      R    KAV ++  AE P I  GGGV+ ++AS+E++ LA   G PVT TL+G
Sbjct: 181 QEKQIDPNTRRLCVKAVEMISNAETPIILAGGGVISSHASEEIQILANRFGIPVTTTLLG 240

Query: 257 LGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKIIH 316
           +G  P  +   +GM+GMHGT  AN A+  CD+LIAIG RF DR  G    F   A  +IH
Sbjct: 241 IGTIPSDNPLNLGMIGMHGTIAANHAVDTCDLLIAIGTRFSDRSCGTGGLFAPHA-AVIH 299

Query: 317 IDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVDC 376
           +DIDP  I K   VD+ ++G+ KD+LQE+I +I+      +      W +QI  W+    
Sbjct: 300 VDIDPGEIGKNRTVDLSLIGDAKDILQEIIRKIR------RLRTTIAWRDQINIWKHQAD 353

Query: 377 LKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGLGT 436
           L     S  + PQ V+  +  + KG   I S+VGQ+QMW AQ Y+F  PR ++ SGGLGT
Sbjct: 354 LSPISESNGLYPQQVIRTLASILKGRGIIVSEVGQNQMWTAQNYRFQRPRSFLTSGGLGT 413

Query: 437 MGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGMVR 496
           MG GLP AMG   A P++++ TI G+GS+QM IQE +T  +Y  PVKI  LNN YLGMVR
Sbjct: 414 MGFGLPAAMGASFACPDQQICTIAGDGSLQMNIQEFATLAEYKIPVKILVLNNQYLGMVR 473

Query: 497 QWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVFLD 556
           QWQE+ Y  RYS + + ++ +F K+A AYG  G+RV+   ++  A+++AF  K     +D
Sbjct: 474 QWQELFYARRYSFTELPSI-EFTKIAAAYGIEGVRVDSPEEIPEAIKDAFTTKG-PFLID 531

Query: 557 FQTDPTENVWPMVQAGKGISEML 579
           F+    ENV+PMV AG   +EM+
Sbjct: 532 FRILREENVFPMVPAGAKATEMI 554


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 836
Number of extensions: 46
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 559
Length adjustment: 36
Effective length of query: 549
Effective length of database: 523
Effective search space:   287127
Effective search space used:   287127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_109968179.1 DK846_RS06810 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.32176.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32176.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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