Alignments for a candidate for asp-kinase in Methanospirillum lacunae Ki8-1

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_109969877.1 DK846_RS15330 aspartate kinase

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_003173355.1:WP_109969877.1
          Length = 467

 Score =  397 bits (1021), Expect = e-115
 Identities = 215/470 (45%), Positives = 297/470 (63%), Gaps = 15/470 (3%)

Query: 1   MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR 60
           M  +MKFGGTSV + + +     I+T    + D +VVVVSA   VT+ ++E ++Q +  R
Sbjct: 1   MKLIMKFGGTSVQNADAVGKTMDIITSHLAKGDQMVVVVSAQRGVTDRIIETAEQMVSSR 60

Query: 61  DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPK 120
           D + V   + ++   H   ++    + +   E  ++I   I  L   L  V +L ELTP+
Sbjct: 61  DTSAVNVLVDYLTSTHLTTLQAV--APDYYSETSEVIIRAINNLHDFLHAVFHLRELTPR 118

Query: 121 SRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSA---RVKRLEVKER 177
           SRDY++SFGERL++PI+S A+R  G  S+AL+G EAGI+T  N G A         ++ R
Sbjct: 119 SRDYVISFGERLNAPIISAALRQRGISSLALDGCEAGILTTGNHGDAIALPAGEARIRSR 178

Query: 178 LLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYT 237
           L PL+   + PVV GF+G TE+G +TTLGR GSDY+AA++G  L  D I IWTDV G+ T
Sbjct: 179 LDPLITTSV-PVVMGFMGCTEKGVVTTLGRSGSDYTAAILGAALMVDEIWIWTDVDGIMT 237

Query: 238 TDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTL 297
           TDPRLV  AR IP++SYIE MEL+YFGAKV+H R+IEPAM+K IP+ VKNTF P   GT 
Sbjct: 238 TDPRLVKDARVIPRISYIEVMELSYFGAKVMHSRSIEPAMQKNIPVWVKNTFNPSYPGTC 297

Query: 298 ITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS 357
           I         +VKAI+ I  VA I I GA M+G  G A  IF  L E ++NV++ISQGSS
Sbjct: 298 IEKGERRETRVVKAITFIDKVAAITITGAQMIGRPGVAKHIFSILAENQINVMMISQGSS 357

Query: 358 ETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGA 417
           E NISL++ E+ V  A  AL         +      + R+++ ++DVC ++VVG+GM G 
Sbjct: 358 EANISLIIEEKQVQTAKDAL---------QPLKERCVFREITANEDVCAVAVVGSGMAGM 408

Query: 418 KGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 467
            G AG+ F+A+ ++G N  MI+QGSSEVNISFV+ ++D    V  LHE+F
Sbjct: 409 AGTAGRTFSALGKAGINAMMISQGSSEVNISFVVKQEDGPRAVMVLHEEF 458


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 547
Number of extensions: 20
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 467
Length adjustment: 33
Effective length of query: 440
Effective length of database: 434
Effective search space:   190960
Effective search space used:   190960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_109969877.1 DK846_RS15330 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.16744.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16744.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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