Alignments for a candidate for carA in Sulfurimonas denitrificans DSM 1251

Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate WP_148153503.1 SUDEN_RS00420 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::Q9LVW7
         (430 letters)



>NCBI__GCF_000012965.1:WP_148153503.1
          Length = 379

 Score =  315 bits (806), Expect = 2e-90
 Identities = 163/373 (43%), Positives = 232/373 (62%), Gaps = 6/373 (1%)

Query: 58  ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117
           A + LE+G    A SFGA  T + E+VFN S++GYQEI++DPSYAGQFV  T P+IGN G
Sbjct: 8   AWIYLENGIFLEANSFGAESTVVGEIVFNVSMSGYQEIMSDPSYAGQFVTFTMPEIGNVG 67

Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177
           VN  D ES      G+++R      S++R   +L+++L ++++MG+ D+DTR +T+ LRE
Sbjct: 68  VNAQDMESKSAHAKGMIVRKYQDRYSSFRAEDSLSNFLKKQNVMGICDIDTRYLTKMLRE 127

Query: 178 DGSLIGVLSTEQSKTDDELLQMSRSWDIVGIDLISDVSCKSPYEWVDKTNAEWDFNTNSR 237
           +GS++ + STE S  D+    +  S  I  ++ I  VS K  Y+    T  + +F  +  
Sbjct: 128 EGSMMMIASTEISNKDELKKILQNSSRIEHVNYIEQVSTKVAYKHTQSTYNDREFKFDEA 187

Query: 238 DGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALK----MNPDGILFSNGPG 293
                 ++  DFG+K NIL  L S    + V+P+ F   E +K       DG+  SNGPG
Sbjct: 188 PASEANIVVLDFGVKTNILNELVSAKIGVEVIPNNFSGDELIKRYNNKEIDGVFLSNGPG 247

Query: 294 DPSAVPYAVETVKELL-GKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTG 352
           DP  + +    +K+L+  KVP++GIC+GHQLL  A G  TFK+KFGHHGGN PV+N RTG
Sbjct: 248 DPLVLKHEQREIKKLIDAKVPMFGICLGHQLLSIAHGYDTFKLKFGHHGGNQPVKNMRTG 307

Query: 353 QVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHDS 412
            VEI+AQNHNY V P ++    EVTH NL D +  GL + +  + S+Q+HPE+SPGP +S
Sbjct: 308 LVEITAQNHNYNV-PDNIVEVAEVTHTNLFDNTIEGLKYNDSPIFSVQHHPESSPGPKES 366

Query: 413 DNAFREFIELMKR 425
              F EF+ L+KR
Sbjct: 367 RYIFNEFLSLIKR 379


Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 379
Length adjustment: 31
Effective length of query: 399
Effective length of database: 348
Effective search space:   138852
Effective search space used:   138852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_148153503.1 SUDEN_RS00420 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.26405.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26405.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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