Alignments for a candidate for ilvE in Bradyrhizobium sp. BTAi1

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_148221388.1 BBTA_RS02885 branched-chain amino acid aminotransferase

Query= BRENDA::P9WQ75
         (368 letters)



>NCBI__GCF_000015165.1:WP_148221388.1
          Length = 362

 Score =  291 bits (745), Expect = 2e-83
 Identities = 149/339 (43%), Positives = 209/339 (61%), Gaps = 6/339 (1%)

Query: 30  GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
           GFGKY T+ MV   Y++G GW    ++PYG +  DP A+VLHY Q ++EG+KAYR  D S
Sbjct: 17  GFGKYMTNAMVLCRYSDGTGWEKPSLVPYGTLAFDPCALVLHYGQAIYEGMKAYRSPDAS 76

Query: 90  IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
           I  FR D NAAR R+SARR+ + E+P+ +FIE++  L+   + WVP AG E +LYLRP +
Sbjct: 77  IALFRPDRNAARFRASARRMEMAEMPEGLFIEAVSTLVDAQRDWVP-AGAESSLYLRPVM 135

Query: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
            A E   GVR +T Y + ++A+P  A ++ G+AP  + VS ++ RA PGG G AK  GNY
Sbjct: 136 VADEAAFGVRRSTTYLFFIVATPVDALYRDGMAPFRLMVSEDFARAAPGGGGDAKTSGNY 195

Query: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
             +L+A   A  +G + V+WLD VER +IEE G  N+F   G      L+TP L+G +LP
Sbjct: 196 GRTLIALEAARRSGFNNVLWLDPVEREFIEEAGITNVFVRRGRD----LLTPPLNGRILP 251

Query: 270 GITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGAS 329
           G+ R+++LQ+A D G +  ER I + E      AG++ EVF  GTA  + PV  +     
Sbjct: 252 GVMRETILQVARDWGLSAIEREISVTELLSGIDAGDVDEVFLSGTAVHVAPVGVIARRGR 311

Query: 330 EFRI-ADGQPGEVTMALRDTLTGIQRGTFADTHGWMARL 367
           E R+ A G+   +   L   ++ IQRG  ADT GWM R+
Sbjct: 312 EHRLAAAGEAQSLAKRLSQAISEIQRGLVADTRGWMRRV 350


Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 357
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 362
Length adjustment: 30
Effective length of query: 338
Effective length of database: 332
Effective search space:   112216
Effective search space used:   112216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_148221388.1 BBTA_RS02885 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.28521.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28521.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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