Alignments for a candidate for fadA in Stenotrophomonas chelatiphaga DSM 21508

Align 3-ketoacyl-CoA thiolase; EC 2.3.1.16; ACSs; Acetyl-CoA acyltransferase; Acyl-CoA ligase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta (uncharacterized)
to candidate WP_152983481.1 ABB28_RS14140 acetyl-CoA C-acetyltransferase

Query= curated2:B7UFZ9
         (436 letters)



>NCBI__GCF_001431535.1:WP_152983481.1
          Length = 431

 Score =  287 bits (735), Expect = 4e-82
 Identities = 167/427 (39%), Positives = 247/427 (57%), Gaps = 15/427 (3%)

Query: 15  IAIVSGLRTPFARQATAFHGIPAGDLGKMV--VGELLARTEIPAEVIEQLVFGQVVQMPE 72
           +AI+ G+R PF RQ TA+  +  G+LG  V  +G L+ R  +  + + ++  G V++   
Sbjct: 12  VAILGGVRIPFCRQNTAYSDV--GNLGMSVRTLGALVERFGLHGQQLGEVAMGAVIKHSS 69

Query: 73  APNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVL 132
             N+ RE  L +G++  T   ++ RAC TS   +  VA  +  G I +GI GG+D++S +
Sbjct: 70  DWNLGREAALSSGLSPLTPGITMQRACGTSLDTIIAVANKIALGQIESGIGGGSDTTSDV 129

Query: 133 PIGVSKKLARVLVDVNKARTMSQRLKLFSR-LRLRDLMPVPPAVAEYSTGLRMGDTAEQM 191
           PI   KKL   L+  N+A++   +++  +R  +  +  P  P VAE  TG  MGD  E M
Sbjct: 130 PIVYGKKLRARLLAANRAKSTGDKIRALTRGFKFSEFKPEFPGVAEPRTGKSMGDHCEDM 189

Query: 192 AKTYGITREQQDALAHRSHQRAAQAWSEGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLA 251
           AK + I+R+ QD  A  SH++ A A+  G   +      I P++  +  DN +R ++SL 
Sbjct: 190 AKEWNISRDSQDEWAVSSHRKLAAAYERGFFND-----LIAPFRG-VERDNILRADTSLE 243

Query: 252 DYAKLRPAFDRK--HGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAI 309
             A L+PAFD+    GT+TAANSTPLTDGA+AV+L +E  A+  G  PL YLR     A+
Sbjct: 244 KLATLKPAFDKVSGRGTLTAANSTPLTDGASAVLLASEEWARAHGHAPLAYLRDSQVAAV 303

Query: 310 DV--WQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLGSERFARDVL 367
           D    + +L+ P  + P  L+R GLT+ D  + ++HEAFAAQ L  ++   SE + R+ L
Sbjct: 304 DFVHGEGLLMAPTVAVPEMLKRNGLTLQDFDIYEIHEAFAAQVLCTLRAWESEDYCRNRL 363

Query: 368 GRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGL 427
           G     G +D  K N LG S+A GHPFAATGAR+I     +L  RGGG  LV+ C AGG+
Sbjct: 364 GLDAPLGRIDPEKINPLGSSLATGHPFAATGARVIATAAKQLAERGGGRALVSICTAGGM 423

Query: 428 GAAMVLE 434
           G   ++E
Sbjct: 424 GVVAIVE 430


Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 447
Number of extensions: 24
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 431
Length adjustment: 32
Effective length of query: 404
Effective length of database: 399
Effective search space:   161196
Effective search space used:   161196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_152983481.1 ABB28_RS14140 (acetyl-CoA C-acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.27180.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27180.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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