Alignments for a candidate for argI in Rhodospirillum rubrum ATCC 11170

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_162470667.1 RRU_RS16905 ornithine carbamoyltransferase

Query= BRENDA::Q98BB6
         (303 letters)



>NCBI__GCF_000013085.1:WP_162470667.1
          Length = 305

 Score =  378 bits (971), Expect = e-110
 Identities = 187/298 (62%), Positives = 224/298 (75%)

Query: 4   RHFTDLSTVSEGDLRFMLDDAVVRKARLKAGERTRPLEGKVLAMIFDKPSTRTRVSFDVG 63
           RHF +LS      LR MLD  +  KA  +AG  + PL GK LA+IF+KPSTRTRVSF+VG
Sbjct: 5   RHFLELSDFDAPALRAMLDRGLAFKAERRAGVVSAPLAGKTLALIFEKPSTRTRVSFEVG 64

Query: 64  MRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTENATVPVI 123
           MRQLGG +I L+ TE QLGR ETIADTA+VLSRYVD IM+RT    +L +L++NA+VPVI
Sbjct: 65  MRQLGGSSITLSPTETQLGRGETIADTARVLSRYVDGIMLRTNDPAKLRDLSQNASVPVI 124

Query: 124 NGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFNLNVAVP 183
           NGLTD  HPCQ+MAD+MTFEEHRG + GK + W GDGNNV  S ++ASA F F + +A P
Sbjct: 125 NGLTDAAHPCQIMADLMTFEEHRGSITGKVVTWVGDGNNVACSWIKASALFGFTMRLACP 184

Query: 184 EGSEPAQKHIDWSKAHGGKLHFTRSPEEAVDQADCVVTDCWVSMGQEHRARGHNVFSPYQ 243
              EP Q  +DW++A+GG +   R P+EAV  ADCVVTD WVSMG +  A  H +  PYQ
Sbjct: 185 AELEPPQGVLDWARANGGAVEVLRDPQEAVAGADCVVTDTWVSMGCDGAAARHALLRPYQ 244

Query: 244 VNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKAVLAWCL 301
           V A LMA A  DALFMHCLPAHRGEEVT++VIDGP SVV+DEAENRLHAQK +LAWC+
Sbjct: 245 VTAPLMAAAAADALFMHCLPAHRGEEVTEDVIDGPQSVVWDEAENRLHAQKGILAWCM 302


Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 330
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 305
Length adjustment: 27
Effective length of query: 276
Effective length of database: 278
Effective search space:    76728
Effective search space used:    76728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_162470667.1 RRU_RS16905 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.20960.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20960.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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