Alignments for a candidate for serC in Thermodesulforhabdus norvegica DSM 9990

Align Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 (characterized)
to candidate WP_177193592.1 BM091_RS08375 3-phosphoserine/phosphohydroxythreonine transaminase

Query= SwissProt::Q59196
         (362 letters)



>NCBI__GCF_900114975.1:WP_177193592.1
          Length = 360

 Score =  400 bits (1029), Expect = e-116
 Identities = 201/362 (55%), Positives = 261/362 (72%), Gaps = 5/362 (1%)

Query: 1   MSKRAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLA 60
           M+ R YNFN GPAALPL VLER + E +DY+ TGMS+MEMSHR   +  +  EA AR+  
Sbjct: 1   MTTRVYNFNPGPAALPLPVLERVRDELLDYKGTGMSVMEMSHRSQEFSRILEEAIARIKR 60

Query: 61  LLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHV 119
           LL     ++VLF+QGGAS QF M+PMN    G+  +Y+ TG+W+SKA++EAK++G D  V
Sbjct: 61  LLKLDDRFQVLFLQGGASLQFCMVPMNLALTGKPIDYIDTGTWSSKAIQEAKILGKDVRV 120

Query: 120 AASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDIL 179
            ASSE   Y  +P      + ++A+YLH+TSN TI G Q+K+FP+TG +PL+ DMSSDI 
Sbjct: 121 IASSEDKEYSYIPG--NFSVDEDASYLHITSNNTIRGTQWKSFPNTGGIPLVADMSSDIF 178

Query: 180 SRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNT 239
           SR FD + FGL+YAGAQKN GP+GVT+VI+R+D++   P  LPTML+Y TY + NSLYNT
Sbjct: 179 SRVFDPSPFGLIYAGAQKNAGPAGVTIVIIRKDMLERVPPELPTMLKYTTYAEKNSLYNT 238

Query: 240 PPSFGIYMVNEVLKWIEER-GGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDM 298
           PP F IY+V  V++W+EE  GGLE ++  NR KA ++Y  ID+    YRG    DSRS M
Sbjct: 239 PPCFAIYVVGLVMEWLEEEIGGLEKMEAINRSKAEMLYSCIDEI-EMYRGTAHPDSRSMM 297

Query: 299 NITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFK 358
           N+TFRL + ELEK+FV+ + Q G VGLKGHRSVGG RAS+YNAVP E+ E LV+FM  F 
Sbjct: 298 NVTFRLPTPELEKKFVEEAAQRGLVGLKGHRSVGGCRASLYNAVPVEAVEKLVEFMREFA 357

Query: 359 RS 360
           R+
Sbjct: 358 RN 359


Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 404
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 360
Length adjustment: 29
Effective length of query: 333
Effective length of database: 331
Effective search space:   110223
Effective search space used:   110223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_177193592.1 BM091_RS08375 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.25442.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25442.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.