Alignments for a candidate for aroG in Trichormus variabilis ATCC 29413

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_185478774.1 AVA_RS01675 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::P00888
         (356 letters)



>NCBI__GCF_000204075.1:WP_185478774.1
          Length = 347

 Score =  408 bits (1048), Expect = e-118
 Identities = 198/343 (57%), Positives = 250/343 (72%)

Query: 6   LNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCGPCSIH 65
           L N +I +  VL+TP ++K   PL+      +   R  I  I+  +D R  +V GPCSIH
Sbjct: 5   LTNANIENYHVLLTPNEVKEKLPLTETAAEIVLQFRCEIEKILDFQDRRKFIVVGPCSIH 64

Query: 66  DPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDVEAGLQ 125
           DP  ALEYA + K LA  V D L L+MRVYFEKPRTTVGWKGLINDP MD SF VE GL 
Sbjct: 65  DPNAALEYAHKLKKLAERVQDKLLLIMRVYFEKPRTTVGWKGLINDPEMDDSFLVENGLL 124

Query: 126 IARKLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVG 185
           +AR LL++L  +GLP ATEALDP  PQY+G+L +W+AIGARTTESQTHREMASGLSMPVG
Sbjct: 125 LARDLLIKLTELGLPTATEALDPIVPQYIGELITWAAIGARTTESQTHREMASGLSMPVG 184

Query: 186 FKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGGKAPNYSPA 245
           FKNGTDG++  A+NA+ +A  PH F+GIN  GQV++ +T+GN  GHVILRGG  PN+   
Sbjct: 185 FKNGTDGNIQVALNALHSARMPHNFLGINPDGQVSVFETKGNAYGHVILRGGNQPNFDSE 244

Query: 246 DVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGLMIESN 305
            V Q E++++QA L P +++DCSHGN+NK+YR Q  V E+VV QI DGN SI+G+M+ESN
Sbjct: 245 SVRQVEEKLKQAKLPPRIVIDCSHGNTNKNYRLQSDVLENVVQQIVDGNTSIVGMMLESN 304

Query: 306 IHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALLREIHQDLN 348
           ++EGNQ     R E+KYGVSVTD CI WE T+ ++   ++ LN
Sbjct: 305 LYEGNQPINCKREELKYGVSVTDPCIGWEQTEKIILAAYEKLN 347


Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 393
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 347
Length adjustment: 29
Effective length of query: 327
Effective length of database: 318
Effective search space:   103986
Effective search space used:   103986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_185478774.1 AVA_RS01675 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.18782.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18782.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.