Alignments for a candidate for thrC in Sinorhizobium fredii NGR234

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_193377893.1 NGR_RS14065 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000018545.1:WP_193377893.1
          Length = 468

 Score =  657 bits (1694), Expect = 0.0
 Identities = 327/462 (70%), Positives = 375/462 (81%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           +KY+STRGEA  LGF DALLAGLARDGGLYLP+E+P F+ ++IRALRGKSY E+A  VL 
Sbjct: 4   VKYISTRGEAAPLGFCDALLAGLARDGGLYLPKEWPTFSKKEIRALRGKSYQEIAFTVLQ 63

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PFT GEIPAA F  M+  AY TFRH A+ PLVQT  N FV+ELFHG TLAFKDVAMQLLA
Sbjct: 64  PFTNGEIPAAKFREMIDGAYATFRHPAIAPLVQTGPNAFVMELFHGSTLAFKDVAMQLLA 123

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R+MD+VLA+RGERATIVGATSGDTGGAAI+AF GRD TDIFILFP+G+VSPVQQRQMT++
Sbjct: 124 RLMDHVLAERGERATIVGATSGDTGGAAIDAFAGRDRTDIFILFPHGKVSPVQQRQMTTA 183

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
             SNVHA+++ GNFDDCQNLVK MFND  F D + LSGVNSINWARIM Q+VYYFT A++
Sbjct: 184 NASNVHAIAVNGNFDDCQNLVKAMFNDTAFRDRVKLSGVNSINWARIMAQIVYYFTTAIA 243

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LG PDR +SFTVPTGNFGDIFAGYVAKRMGLPI++LIIATN+NDIL+RTL++G YEMR V
Sbjct: 244 LGGPDRKISFTVPTGNFGDIFAGYVAKRMGLPIDKLIIATNENDILARTLKTGRYEMREV 303

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             TTSPSMDIQISSNFERLLFEA GR+A+ VR  M  LKQSG F I E  L  IR EF A
Sbjct: 304 KATTSPSMDIQISSNFERLLFEAFGREASEVRAAMASLKQSGSFAIEEGALKKIRKEFRA 363

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKASGTAPMVVLATAHPAKFPDAVK 420
           GR++  + AATI     K GYLLDPH+AIGV VA +    +APMVVL TAHPAKFPDAVK
Sbjct: 364 GRASEKQVAATIRDTFKKSGYLLDPHTAIGVSVAAKHEKPSAPMVVLGTAHPAKFPDAVK 423

Query: 421 AACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSR 462
           +A G++P LP WL DLM R E F +L  ELK VE ++   +R
Sbjct: 424 SASGIDPTLPTWLADLMTRAERFDILDAELKNVETFIGERTR 465


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 615
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 468
Length adjustment: 33
Effective length of query: 430
Effective length of database: 435
Effective search space:   187050
Effective search space used:   187050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_193377893.1 NGR_RS14065 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.10078.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10078.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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