Alignments for a candidate for lysA in Methanococcus aeolicus Nankai-3

Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate WP_198002423.1 MAEO_RS01035 diaminopimelate decarboxylase

Query= SwissProt::Q58497
         (438 letters)



>NCBI__GCF_000017185.1:WP_198002423.1
          Length = 436

 Score =  669 bits (1727), Expect = 0.0
 Identities = 323/436 (74%), Positives = 381/436 (87%)

Query: 3   IMFLGNDTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEET 62
           ++FLGN+ + +++ +  IDG+D  ELAE+ GTPLYVMSE QI  N+ RY EAFK + E+T
Sbjct: 1   MVFLGNEMITVENNKLKIDGFDVSELAEQHGTPLYVMSESQIVKNFTRYTEAFKEYSEKT 60

Query: 63  GKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKE 122
           GKEFIV+YAYKAN+NLA+ ++L  LGCGADVVSGGELY AK+ +V S KIVFNGNCK +E
Sbjct: 61  GKEFIVSYAYKANSNLAVLKILTNLGCGADVVSGGELYTAKMVSVDSSKIVFNGNCKLEE 120

Query: 123 EIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKN 182
           EIIMGIE NIRAFNVDSISEL LINE A +LG+ ANVAFRINPNVNPKTHPKISTGLK N
Sbjct: 121 EIIMGIETNIRAFNVDSISELELINEVAGKLGKVANVAFRINPNVNPKTHPKISTGLKSN 180

Query: 183 KFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE 242
           KFGLDVE+GIA+KAIKMA EM+ V +VG+HCHIGSQLTDISPF+EET+KVMDFVV LKE+
Sbjct: 181 KFGLDVEAGIALKAIKMAKEMKNVKIVGIHCHIGSQLTDISPFVEETKKVMDFVVSLKEQ 240

Query: 243 GIEIEDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVAT 302
           GI+IEDVN+GGGLG+PY K+ +IP QKDLA+A+INTML+Y DKVE+PNLI+EPGRSLVAT
Sbjct: 241 GIKIEDVNIGGGLGVPYDKNTEIPVQKDLANAVINTMLEYADKVELPNLIIEPGRSLVAT 300

Query: 303 AGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKNEKEVVSIAGGLC 362
           AG LLGKVHHIKETP  KW+MIDAGMNDMMRPA+YEAYH I  C +++EKEVV+IAGGLC
Sbjct: 301 AGVLLGKVHHIKETPSAKWIMIDAGMNDMMRPAIYEAYHEITPCTIRDEKEVVNIAGGLC 360

Query: 363 ESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGVFLIRERE 422
           ESSDVFG++REL K+EV D +AI DVGAYGISMANNYNARG  +M+LTS+ G + IRERE
Sbjct: 361 ESSDVFGKERELPKIEVKDTIAILDVGAYGISMANNYNARGISKMILTSEDGAYTIRERE 420

Query: 423 TYADLIAKDIVPPHLL 438
           TYADL++KDI+PP  L
Sbjct: 421 TYADLLSKDIIPPKYL 436


Lambda     K      H
   0.318    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 674
Number of extensions: 23
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 436
Length adjustment: 32
Effective length of query: 406
Effective length of database: 404
Effective search space:   164024
Effective search space used:   164024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_198002423.1 MAEO_RS01035 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.1603.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1603.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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