Alignments for a candidate for leuD in Algiphilus aromaticivorans DG1253

Align 3-isopropylmalate dehydratase small subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate WP_198021954.1 U743_RS06180 3-isopropylmalate dehydratase small subunit

Query= uniprot:Q845W4
         (216 letters)



>NCBI__GCF_000733765.1:WP_198021954.1
          Length = 217

 Score =  246 bits (628), Expect = 2e-70
 Identities = 125/210 (59%), Positives = 149/210 (70%), Gaps = 1/210 (0%)

Query: 1   MEKFTVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60
           M+ FT H G + PLDR NVDTDAIIPKQ+LKSIKRTGFGP  FD+WRYLD G    D + 
Sbjct: 2   MQPFTTHRGRMLPLDRANVDTDAIIPKQYLKSIKRTGFGPFLFDDWRYLDPGTLDVDPAT 61

Query: 61  RPLNPDFVLNQPRYQGASILVTRKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFFNNC 120
           R  N DFVLN+P  +GAS++V R NFGCGSSREHA WAL  YG RA+IAPS+ADIFF+NC
Sbjct: 62  RRPNTDFVLNEPGREGASVVVARDNFGCGSSREHAVWALADYGIRAVIAPSYADIFFSNC 121

Query: 121 FKNGLLPIVLTEQQVDHLINETVAFNGYQLTIDLEAQVVRTPDGRDYPFEITAFRKYCLL 180
            KNGLLPIVL   +V+ L+    A    ++ IDL AQ V++ D R + FEI   RK  LL
Sbjct: 122 MKNGLLPIVLKGDEVEQLLRVATASPAREVAIDLAAQTVQSDDLR-FSFEIDPKRKKNLL 180

Query: 181 NGFDDIGLTLRHADKIRQFEAERLAKQPWL 210
            G D+IG+TL  AD IR +EA R  + PWL
Sbjct: 181 EGLDEIGITLTQADAIRAYEARRRQEAPWL 210


Lambda     K      H
   0.322    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 177
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 217
Length adjustment: 22
Effective length of query: 194
Effective length of database: 195
Effective search space:    37830
Effective search space used:    37830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_198021954.1 U743_RS06180 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.17608.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17608.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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