Alignments for a candidate for argB in Thiomicrospira microaerophila ASL8-2

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_198401069.1 NA59_RS07050 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_000934765.1:WP_198401069.1
          Length = 298

 Score =  442 bits (1138), Expect = e-129
 Identities = 215/298 (72%), Positives = 260/298 (87%)

Query: 1   MTLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGI 60
           M L++D A  VA VL+EALPYI+RF GKT+V+KYGGNAM  + L AGFARD+VLMK VG+
Sbjct: 1   MNLNKDQAQNVASVLAEALPYIQRFAGKTIVVKYGGNAMTEDHLMAGFARDIVLMKLVGM 60

Query: 61  NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHG 120
           NPVVVHGGGPQIGDLLKR+  ES F+ GMRVTD  TMD+VEMVLGG VNK+IVNLI++HG
Sbjct: 61  NPVVVHGGGPQIGDLLKRVGKESEFVQGMRVTDTETMDIVEMVLGGLVNKEIVNLIHQHG 120

Query: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIP 180
           G+++GLTGKD  LI AKKL VT+ TP+M  PEIIDIGHVGEV+ +N G+++ML++GDFIP
Sbjct: 121 GNSVGLTGKDGNLIMAKKLKVTKHTPDMDAPEIIDIGHVGEVSRINTGVIDMLIQGDFIP 180

Query: 181 VIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVN 240
           VIAP+GV   G SYNINADLVAGK+AEAL+AEKLMLLTN AGL++KQG++LTGL+ + V+
Sbjct: 181 VIAPVGVDEQGCSYNINADLVAGKIAEALQAEKLMLLTNTAGLLNKQGELLTGLNAKMVD 240

Query: 241 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 298
           ELIADGTIYGGMLPKI+CAL+AVQGGV +AHI+DGRV +AV+LE+FTD GVGTLI+ R
Sbjct: 241 ELIADGTIYGGMLPKIQCALDAVQGGVKAAHIVDGRVEHAVMLEVFTDDGVGTLITAR 298


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 298
Length adjustment: 27
Effective length of query: 274
Effective length of database: 271
Effective search space:    74254
Effective search space used:    74254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_198401069.1 NA59_RS07050 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.14213.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14213.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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