Alignments for a candidate for dapD in Methyloferula stellata AR4T

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate WP_200860016.1 A3OQ_RS0100125 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= CharProtDB::CH_024869
         (274 letters)



>NCBI__GCF_000385335.1:WP_200860016.1
          Length = 285

 Score =  328 bits (841), Expect = 8e-95
 Identities = 180/280 (64%), Positives = 204/280 (72%), Gaps = 13/280 (4%)

Query: 4   LQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDG-----QWVTHQW 58
           L+ IIE AFE RA I  +    + REAVN  +  LDSG LRVAEKI G      W  +QW
Sbjct: 6   LEKIIEAAFEDRANINASTQGDI-REAVNAALLALDSGKLRVAEKIAGAVGPQSWKVNQW 64

Query: 59  LKKAVLLSFRINDNQVIEGAE--SRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAF 116
           LKKAVLLSFR+ND   I G    + ++DKVP KF  +        GFR VP   VR+ AF
Sbjct: 65  LKKAVLLSFRLNDMAPIAGGPGGATWWDKVPSKFDGWTATEHAAAGFRSVPNCVVRRSAF 124

Query: 117 IARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPT 176
           IA   VLMPS+VN+GAYVD GTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPT
Sbjct: 125 IAPGVVLMPSFVNLGAYVDTGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPT 184

Query: 177 IIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSG 236
           IIED+CFIGARSE+VEGV+V +G+V+SMG +I  ST+I DR TG+IH G VP  SVVVSG
Sbjct: 185 IIEDDCFIGARSEIVEGVVVGQGAVVSMGTFISASTKIIDRATGQIHIGHVPPYSVVVSG 244

Query: 237 NLPSK---DGK--YSLYCAVIVKKVDAKTRGKVGINELLR 271
           NLP K   DG    SLYCAVIVK VDA+TR K  IN+LLR
Sbjct: 245 NLPGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTAINDLLR 284


Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 263
Number of extensions: 9
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 285
Length adjustment: 26
Effective length of query: 248
Effective length of database: 259
Effective search space:    64232
Effective search space used:    64232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_200860016.1 A3OQ_RS0100125 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.19488.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19488.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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