Alignments for a candidate for asp-kinase in Methylohalobius crimeensis 10Ki

Align Aspartokinase 3; Aspartate kinase 3; Aspartokinase III; EC 2.7.2.4 (characterized)
to candidate WP_200861531.1 H035_RS0106110 aspartate kinase

Query= SwissProt::P94417
         (454 letters)



>NCBI__GCF_000421465.1:WP_200861531.1
          Length = 450

 Score =  284 bits (726), Expect = 5e-81
 Identities = 168/454 (37%), Positives = 262/454 (57%), Gaps = 16/454 (3%)

Query: 5   KFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKHYAEDTKVTDLLIACA-------E 57
           KFGGSS+AS  Q++KV  IV +D  R+ VVVSAPG+  +++ KVTD LI  A       +
Sbjct: 3   KFGGSSVASAGQIEKVKQIVQADKRRRYVVVSAPGRSRSDEQKVTDHLINIATSGAHFRD 62

Query: 58  QYLATGSAPELAEAVVERYALIANELQLGQS-IIEKIRDDLFTLLEGDKSNPEQYLDAVK 116
           Q L+  +  E  +AV+E++  IA+EL +    I+  ++ DL T LEGD+      +  + 
Sbjct: 63  QRLSI-TPNESKKAVLEKFTRIASELGVDAGDILASLKKDLATSLEGDRR-----IAFLA 116

Query: 117 ASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFVTNEPGNAQVLPESYQNLYRLRERDGL 176
           + GE  NA+++A YF+  G+ A    P+D GL V+++   A+VL E+Y N+  L   DG+
Sbjct: 117 SRGEHYNARIVAEYFQNSGMTARARLPEDFGLLVSDDYLGAKVLSEAYANIAELTSEDGI 176

Query: 177 IIFPGFFGFSKDGDVITFSRSGSDITGSILANGLQADLYENFTDVDAVYSVNPSFVENPK 236
            + PGF+G ++ G+V  FSR GSD+TG  +A  + AD YEN+TDV  V+ V+PS +   +
Sbjct: 177 AVIPGFYGVTQAGEVAVFSRGGSDLTGGEVAYAIDADTYENWTDVSGVFEVDPSLIPEAR 236

Query: 237 EISELTYREMRELSYAGFSVFHDEALIPAFRAGIPVQIKNTNNPSAEGTRVVSKRDNTNG 296
            I  LT++E+R LS  GF+VFH +A++      IP+ I+NTN P   GT ++++R    G
Sbjct: 237 AIPRLTFKEIRLLSSKGFNVFHLDAMLSCKERKIPIHIRNTNRPQEPGTIILNERVPEEG 296

Query: 297 PVVGIASDTGFCSIYISKYLMNREIGFGRRALQILEEHGLTYEHVPSGIDDMTIILRQGQ 356
            +VGIA       IY+ K ++  E+GF    LQI +E  +   H P+  DD+ +++ Q  
Sbjct: 297 -IVGIARLENMAYIYLEKDMLGEEVGFTASLLQIFQEFNINTYHYPTDKDDIAVLVNQDD 355

Query: 357 MDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGEAMRHNVGTTARAAKALSEAQVNIE 416
           +       + + IE+ L  D + V ++LA+I  VG  ++ N      A  ALS   + IE
Sbjct: 356 L-TGNINDLRRHIEKKLKPDYMDVVYNLAIITPVGLGLKGNSYPIVDALLALSRNHIPIE 414

Query: 417 MINQGSSEVSMMFGVKEAEERKAVQALYQEFFAG 450
           MI+Q  S++    GV +A    A++ LY +   G
Sbjct: 415 MIDQAPSQICFHIGVSQAVADDALKILYDQLIKG 448


Lambda     K      H
   0.316    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 478
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 450
Length adjustment: 33
Effective length of query: 421
Effective length of database: 417
Effective search space:   175557
Effective search space used:   175557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_200861531.1 H035_RS0106110 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.25406.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25406.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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