Align Chorismate mutase AroH; EC 5.4.99.5 (characterized)
to candidate WP_211262473.1 NITAL_RS17215 chorismate mutase
Query= SwissProt::Q84FH6
(122 letters)
>NCBI__GCF_000969705.1:WP_211262473.1
Length = 123
Score = 97.8 bits (242), Expect = 4e-26
Identities = 53/117 (45%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 2 VRGIRGAITVEEDTPEAIHQATRELLLKMLEANGIQSYEELAAVIFTVTEDLTSAFPAEA 61
VR +RGA T+E D E + + T E++ + NG+ ++L +++FT T D+ SAFPAEA
Sbjct: 6 VRALRGATTLEVDEREHLLERTEEVMSAIFARNGLTE-DDLISIVFTATADIHSAFPAEA 64
Query: 62 ARQIGMHRVPLLSAREVPVPGSLPRVIRVLALWNTDTPQDRVRHVYLREAVRLRPDL 118
AR G VPL+ ARE+ + G + R IR+L TD P +RHVYL EA +LR DL
Sbjct: 65 ARVAGFTHVPLMCARELEIDGGVKRCIRLLIHAYTDRPAADLRHVYLHEARQLRTDL 121
Lambda K H
0.320 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 123
Length adjustment: 13
Effective length of query: 109
Effective length of database: 110
Effective search space: 11990
Effective search space used: 11990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)
Align candidate WP_211262473.1 NITAL_RS17215 (chorismate mutase)
to HMM TIGR01796 (aroH: chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.21392.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21392.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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