Alignments for a candidate for ilvC in Acidimicrobium ferrooxidans DSM 10331

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_218914812.1 AFER_RS08010 ketol-acid reductoisomerase

Query= BRENDA::D3PT81
         (339 letters)



>NCBI__GCF_000023265.1:WP_218914812.1
          Length = 337

 Score =  400 bits (1027), Expect = e-116
 Identities = 203/335 (60%), Positives = 253/335 (75%), Gaps = 1/335 (0%)

Query: 3   IYYDQDADIGFIKDKTVAILGFGSQGHAHALNLRDSGIKVVVGLRPGSRNEEKARKAGLE 62
           +YYD+DA+   I D+ VAI+G+GSQGHAHALNL DSG+ V VGLR GS + +KAR +GLE
Sbjct: 1   MYYDKDANPALITDRRVAIIGYGSQGHAHALNLLDSGVPVRVGLREGSASADKARASGLE 60

Query: 63  VLPVGEAVRRADVVMILLPDETQGAVYKAEVEPNLKEGAALAFAHGFNIHFGQIKPRRDL 122
           V  V +AVR AD+VM+L+PD T   +++ +V PNL+ G+A+AFAHGFNI FG I+P   +
Sbjct: 61  VSSVADAVRWADLVMLLVPDTTAPTLWREQVAPNLQPGSAVAFAHGFNIRFGLIEPDPSV 120

Query: 123 DVWMVAPKGPGHLVRSEYEKGSGVPSLVAVYQDASGSAFPTALAYAKANGGTRAGTIATT 182
           DV M+APKGPGHL+R  YE+G G+PSL+AV  DASG A  TALAYA A G TRAG + TT
Sbjct: 121 DVIMIAPKGPGHLLRRTYEEGGGIPSLIAVANDASGRAHDTALAYAWAIGSTRAGVLDTT 180

Query: 183 FKDETETDLFGEQTVLCGGLTQLIAAGFETLVEAGYPPEMAYFECLHEVKLIVDLIYESG 242
           F +ETETDLFGEQ VLCGGL+QL+ AGF+TLVEAGY PE AYFECLHE+KLIVDL+YE G
Sbjct: 181 FAEETETDLFGEQVVLCGGLSQLVRAGFDTLVEAGYQPESAYFECLHELKLIVDLLYEHG 240

Query: 243 FAGMRYSISNTAEYGDYTRGPMVINREETKARMREVLRQIQQGEFAREWMLENVVGQPTL 302
            +GM +S+S TAEYG  TRGP ++N +ET+A MR VL +I+ G FA E + E   G+P  
Sbjct: 241 LSGMWFSVSETAEYGGLTRGPRIVN-DETRAEMRRVLDEIRSGAFASELVDEIAAGRPRF 299

Query: 303 NANRNYWKDHPIEQVGPKLRAMMPFLKSRFTKEEV 337
            A R   ++  IEQVG  LRAMMPFL S    ++V
Sbjct: 300 EALRREAREAQIEQVGRDLRAMMPFLASATKLDQV 334


Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 390
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 337
Length adjustment: 28
Effective length of query: 311
Effective length of database: 309
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_218914812.1 AFER_RS08010 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.21345.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21345.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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