Alignments for a candidate for adiA in Billgrantia desiderata SP1

Align arginine decarboxylase (EC 4.1.1.19) (characterized)
to candidate WP_234251346.1 BZY95_RS03825 biosynthetic arginine decarboxylase

Query= BRENDA::Q7MK24
         (640 letters)



>NCBI__GCF_002151265.1:WP_234251346.1
          Length = 636

 Score =  654 bits (1687), Expect = 0.0
 Identities = 338/629 (53%), Positives = 433/629 (68%), Gaps = 5/629 (0%)

Query: 13  RVRADYNVHYWSQGFYGIDDQGEMYVSPRSDNAH--QIQLSKIVKQLEERQLNVPVLVRF 70
           R R  +N+  W  G++ +DD G   V P    A    + L+ +V QL E  L +PVLVRF
Sbjct: 10  RARRTWNIDQWGSGYFDVDDDGHALVRPLGSEAEGPALPLAPLVDQLREADLRLPVLVRF 69

Query: 71  PQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGL 130
             ILH RV  +C+AF+ A+ E +Y   Y  VYPIKVNQQR VV+EILA++ +   + +GL
Sbjct: 70  SDILHDRVEQLCEAFDLAMREEEYVGGYTAVYPIKVNQQRRVVEEILATRERGHGR-VGL 128

Query: 131 EAGSKPELLAVLAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVL 190
           EAGSKPELLAVLA++    S+IVCNGYKDREYIRLAL+GEKLGH+V++V+EK SEL L+L
Sbjct: 129 EAGSKPELLAVLALSADGPSLIVCNGYKDREYIRLALMGEKLGHRVYLVVEKFSELPLIL 188

Query: 191 REAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLNVISRLKKENQLDTLQ 250
            EA+ LGVTPR+G+R RLAS G GKWQ +GGEKSKFGL+A+Q+L V+ RL++ + L +LQ
Sbjct: 189 EEAERLGVTPRIGLRARLASVGMGKWQDTGGEKSKFGLTAAQMLAVVERLREADSLGSLQ 248

Query: 251 LVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNS 310
           LVHFHLGSQ+ANIRD++ G+ E ARFY  L  LGA I   DVGGGL IDY+GTRS+S  S
Sbjct: 249 LVHFHLGSQIANIRDIQVGLRECARFYQSLLALGAPIDTVDVGGGLGIDYEGTRSRSFCS 308

Query: 311 MNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETV 370
           +NY + EYARN+V+     C + + P P +ISESGR+LTAHHAVLI+NVIG E       
Sbjct: 309 INYSMREYARNVVSAFAQACNEAEIPHPHLISESGRALTAHHAVLITNVIGEERVNDAAP 368

Query: 371 TEPEEDFPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAW 430
               ED P  L+ +WR    L+   + R L+E ++D    ++E+H +F  G+  +  RA 
Sbjct: 369 ERLAEDDP-QLDELWRVHDLLNGSVEPRELVEAWHDLLQAMSEMHDRFLMGLADITVRAE 427

Query: 431 AEQTSLRIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSLFQSLPDSWGIDQVFPV 490
           AE         L   + ++NR HR I+DEL+E+LADK FVNFSLFQS+PD WGIDQ+FPV
Sbjct: 428 AEGVYFAACARLRERLDSRNRAHREIIDELAEKLADKLFVNFSLFQSVPDVWGIDQIFPV 487

Query: 491 LPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGA 550
           LPL+GL     RR V+ DITCDSDG ID YVDGQG+E+TLP+P W +DE  L+GFFLVGA
Sbjct: 488 LPLTGLNREPSRRGVIQDITCDSDGRIDGYVDGQGVETTLPLPEWRDDEERLLGFFLVGA 547

Query: 551 YQEILGDMHNLFGDTHSVVVNVGDQGEINIDFINEGDTVEDMMRYVHIDVDQIRKNY-HS 609
           YQEILGD+HNLFGDT SV   +   GE  +    +GD V D++ YV+ D   +R      
Sbjct: 548 YQEILGDLHNLFGDTDSVDAALDVNGEWVLSHAQQGDRVSDVLAYVNFDAKVLRDRLAGQ 607

Query: 610 LVSQRVDQEEQQQILAELEQGLSGYTYLE 638
           L    +  EEQ+  L +L  GL GYTYLE
Sbjct: 608 LADSGLPAEEQEHFLDDLSAGLQGYTYLE 636


Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1054
Number of extensions: 43
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 636
Length adjustment: 38
Effective length of query: 602
Effective length of database: 598
Effective search space:   359996
Effective search space used:   359996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)

Align candidate WP_234251346.1 BZY95_RS03825 (biosynthetic arginine decarboxylase)
to HMM TIGR01273 (speA: arginine decarboxylase (EC 4.1.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.1529.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1529.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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