Alignments for a candidate for thrC in Caminibacter mediatlanticus TB-2

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_241759873.1 CMTB2_RS02625 threonine synthase

Query= curated2:O24924
         (486 letters)



>NCBI__GCF_000170735.1:WP_241759873.1
          Length = 508

 Score =  402 bits (1033), Expect = e-116
 Identities = 232/507 (45%), Positives = 314/507 (61%), Gaps = 27/507 (5%)

Query: 1   MPFVPTRSLKEKKIDFIEAILNPNAPKGGLYTLERFETLQWQDCLNL-------SYNDLV 53
           M F+ TR    KK  F E ILNP AP GGLY  E+  T+     + L       SY+ + 
Sbjct: 4   MKFIGTRGTDSKKT-FSEVILNPAAPNGGLYVPEKLPTINENFLIRLYDDRDERSYSSVA 62

Query: 54  ECVFERLGLEIPKNLLASALKRY-ENFDNPKNPAPIFALNERLFVQELYHGPSLAFKDMA 112
             +     ++I K+L+  AL  Y +NFD  +   P+  ++E L V EL+HGP+ AFKDMA
Sbjct: 63  RAILSLFKIDIEKDLIEKALYTYLKNFDADE-VVPVVRIDENLAVSELWHGPTRAFKDMA 121

Query: 113 LQPLASLFSNLAVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPKDGTSLVQKL 172
           LQP   + S LA  ++E YL++ +TSGDTGPATL++     N+ VVC+YP +GTS VQKL
Sbjct: 122 LQPFGVILSALAQKRDENYLIMAATSGDTGPATLKTFENKENIKVVCIYPHNGTSEVQKL 181

Query: 173 QMVTQSASNLKVFGISGDFDDAQNALKNLLKDDDFNEALKACQLKLSVANSVNFGRIAFQ 232
           QMVT SA N KV GI GDFDDAQ+ALK+LLKD++F + L    +KLS ANSVNFGRI FQ
Sbjct: 182 QMVTTSAKNEKVLGILGDFDDAQSALKSLLKDEEFRDTLNKSGIKLSAANSVNFGRIIFQ 241

Query: 233 IVYHIWGFLELYKKGAINSKEKITLAIPSGNFGNALGAFYAKKMGLNIDKIKVVTNSNDV 292
           I+YH+W +L+L +   I   EKI + IPSGNFGNALGA+YAKKMGL IDKI + +N N+V
Sbjct: 242 IIYHLWSYLKLLEFNEIKLGEKIDVVIPSGNFGNALGAYYAKKMGLPIDKIVIASNRNNV 301

Query: 293 LREFIETGRYDLTHRSLKQTYSPAMDILKSSNVERALFSLFGFERTLELMQALEEEKFYA 352
           L E I+ G+YDL  + L +T SPAMDILKSSNVER LF  FG +RT ELM+ LEE  F+ 
Sbjct: 302 LYELIKYGKYDLRDKKLIKTISPAMDILKSSNVERMLFDKFGEKRTTELMKFLEERGFFE 361

Query: 353 LKPKELALLQEHFSCASCSDEACLKTIQEVYAEHQYLIDPHTATALNASLKTHEK----- 407
           L   E+  +Q+ F     +D    + I++ YA+  Y+IDPHTATAL A     EK     
Sbjct: 362 LNGDEIKEIQKDFEADFATDAESEEMIRK-YAKKNYIIDPHTATALKAYEYLKEKNKIKN 420

Query: 408 -TLVSATASYEKFPRITLLALNE----------QKKNDNDKAALETLKNSYNTPDSQRLD 456
             +V +TA + KF      AL            ++ + +DK A+  ++  Y       + 
Sbjct: 421 YAVVYSTAEWTKFAPSIYYALTGEDIDREIAEIEENSISDKDAIVYIETHYGVKAPNVIR 480

Query: 457 DLFERGIKHQEVLKLNEIKSSILLWLE 483
           +LF + I ++ ++  ++IK  IL +L+
Sbjct: 481 ELFNKEIVNENIIDKSKIKEEILNFLK 507


Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 630
Number of extensions: 37
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 508
Length adjustment: 34
Effective length of query: 452
Effective length of database: 474
Effective search space:   214248
Effective search space used:   214248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_241759873.1 CMTB2_RS02625 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.26219.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26219.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.