Alignments for a candidate for xylB in Stenotrophomonas chelatiphaga DSM 21508

Align Xylulose kinase (EC 2.7.1.17) (characterized)
to candidate WP_245625313.1 ABB28_RS08205 xylulokinase

Query= reanno::pseudo6_N2E2:Pf6N2E2_805
         (495 letters)



>NCBI__GCF_001431535.1:WP_245625313.1
          Length = 512

 Score =  403 bits (1036), Expect = e-117
 Identities = 215/483 (44%), Positives = 287/483 (59%), Gaps = 4/483 (0%)

Query: 6   LFLGIDCGTQGTKALILDATSGQVLGLGAAAHSMISGANGRREQDTQQWLDAFTQATHQA 65
           ++LGID GTQ  K L  D  + +V+G  + + ++ S  +G REQD   W+ A        
Sbjct: 18  VYLGIDAGTQSLKVLAYDPAAREVVGQQSRSLALDSADDGSREQDAASWIRALQDCV--- 74

Query: 66  LAAAGVDGQAILGIGVSGQQHGLVLLDDQGQVLRPAKLWCDTETTPENDRLLAHLGGEDG 125
           LA        + G+ VSGQQHGLV L     VL P KLWCDT +T + D + A +GGE  
Sbjct: 75  LALPEAVRARVGGLAVSGQQHGLVALAADDSVLAPVKLWCDTSSTAQCDAITAAVGGESA 134

Query: 126 SLERLGVVIAPGYTVSKLLWTREQHPQVFERIASVLLPHDFLNYWLTGRHCSEYGDASGT 185
            +   G  +  GYT SKL WT++  PQ +  +  + LPHD+LN WLTG    E GDASGT
Sbjct: 135 CIAAAGNPLRVGYTASKLPWTKQHRPQAYASLDGIALPHDYLNLWLTGARFMECGDASGT 194

Query: 186 GYFNVRTRQWDVQLLQHIDPSARLQAALPELIEAHQPVGRILPAIAAHLGINPEAVVASG 245
           G+ +VR RQW  Q+L   DP   L   LP L+ A      +LPA+AA LG+     VA G
Sbjct: 195 GWLDVRARQWSPQMLAATDPDRDLAGLLPPLV-APDTTFALLPAVAAALGLPAGIRVAVG 253

Query: 246 GGDNMMGAIGTGNIQPGVITMSLGSSGTVYAYAAEPAVSPQPSVATFCSSSGGWLPLICT 305
           GGDNMM AIGTG ++ G ++MSLG+SGT++A++A P + PQ   A FC+S GGWLPLICT
Sbjct: 254 GGDNMMAAIGTGAVREGRLSMSLGTSGTLFAWSARPKIDPQGRWAAFCASDGGWLPLICT 313

Query: 306 MNLTNATGAIRELLDLDIDAFNALVAKAPIGAEGVCMLPFLNGERVPALPHATGSLLGLT 365
           MN T AT  +  LL +  D   AL+  +  GA G+ +LPF NGER P LP A G+L G+ 
Sbjct: 314 MNCTVATNQVAALLGIQHDQTEALLQASLPGAAGLVLLPFFNGERSPDLPLAKGALHGMD 373

Query: 366 TTNLTRANLCRAVVEGTTFGLRYGLDLLRANGLQAQSIRLIGGGSKSAQWRQIVADTMDT 425
             NL+ ANL RA +EG ++ L+ G D L   GLQ   + L GGG+ SA WRQ++AD    
Sbjct: 374 LHNLSPANLYRAAMEGASYSLKLGYDALHEAGLQGARVVLTGGGANSAAWRQLIADLFQL 433

Query: 426 TVICTEQSEAAALGAAIQAAWCHSGSQTGLAELCERCVKLDPSSETRPIAAHVAASQQAY 485
            V    Q+E AA GAA+QAAW  +G+   LA+L +  V  DP+   +P     A+  + Y
Sbjct: 434 PVEVPVQAEGAAFGAALQAAWACAGASMPLADLVDAHVVFDPALSAQPDPVRGASYARGY 493

Query: 486 ERY 488
           +R+
Sbjct: 494 QRF 496


Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 702
Number of extensions: 34
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 512
Length adjustment: 34
Effective length of query: 461
Effective length of database: 478
Effective search space:   220358
Effective search space used:   220358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_245625313.1 ABB28_RS08205 (xylulokinase)
to HMM TIGR01312 (xylB: xylulokinase (EC 2.7.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.17659.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17659.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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