Alignments for a candidate for maiA in Stenotrophomonas chelatiphaga DSM 21508

Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate WP_245625317.1 ABB28_RS09395 maleylacetoacetate isomerase

Query= reanno::MR1:200836
         (216 letters)



>NCBI__GCF_001431535.1:WP_245625317.1
          Length = 226

 Score =  237 bits (605), Expect = 1e-67
 Identities = 119/217 (54%), Positives = 153/217 (70%), Gaps = 6/217 (2%)

Query: 1   MILYGYWRSSAAYRVRIALNLKGVSAEQLSVHLVRDGGEQHKADYIALNPQELVPTLVVD 60
           ++L+ YWRSSAAYRVRI LNLKGV+ +  +VHLVR GGEQH+  Y  LNPQELVPTL   
Sbjct: 13  IVLHTYWRSSAAYRVRIGLNLKGVAWQGHAVHLVRGGGEQHRDSYHRLNPQELVPTL--- 69

Query: 61  DEQDGDALTQSLAIIEYLDELYPKTPLLPASALERAHVRAMALTIACEIHPLNNLRVLQY 120
            +  G  LTQS+AI+EYLDE++ + PLLP   + RA VRA+A  +AC+IHP+NNLRV+QY
Sbjct: 70  -QHRGQVLTQSMAILEYLDEVFAEPPLLPVDPVARARVRALAQLVACDIHPINNLRVMQY 128

Query: 121 LTQKLTVNEEAKSAWYHHWVATGFTALETQLV--RHSGRYCFGDKVTIADLCLVPQVYNA 178
           L   L +  +A++ W  HW+A G +A+ET L     +G +C GD+  +AD CLVPQ+YNA
Sbjct: 129 LEGPLQLAADARTQWTLHWMAEGLSAMETMLAASADTGTFCHGDQPGLADACLVPQLYNA 188

Query: 179 QRFNVDLTPYPNIMRVWAECNQLPAFADAAPERQADA 215
            RF +DL  YP + R+ A C  LPAF  A PE Q DA
Sbjct: 189 HRFGLDLAGYPILRRIEAACLALPAFDAARPENQPDA 225


Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 170
Number of extensions: 6
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 226
Length adjustment: 22
Effective length of query: 194
Effective length of database: 204
Effective search space:    39576
Effective search space used:    39576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_245625317.1 ABB28_RS09395 (maleylacetoacetate isomerase)
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.28283.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28283.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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