Alignments for a candidate for ilvD in Thermodesulforhabdus norvegica DSM 9990

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_245735215.1 BM091_RS01820 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_900114975.1:WP_245735215.1
          Length = 559

 Score =  556 bits (1432), Expect = e-162
 Identities = 293/549 (53%), Positives = 380/549 (69%), Gaps = 2/549 (0%)

Query: 2   KSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEGV 61
           +S  I  G  RA  R+ L   GL D D +KPFIGI NS+ ++ PGH HLREL+E VK+GV
Sbjct: 11  RSRIIVDGPARAGQRAHLRSLGLLDRDLDKPFIGIVNSWNEMHPGHRHLRELSEEVKKGV 70

Query: 62  NAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCDK 121
             AGG+ FEFNT+AICDGI   H GM Y L SR+ +AD++E +  A  LDGLV +  CDK
Sbjct: 71  YEAGGIPFEFNTIAICDGITQGHRGMCYVLPSRDWIADSIELVVEAQQLDGLVFIGGCDK 130

Query: 122 IVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEELE 181
           I P MLMA ARL++P+I+VTGGPMLPG F+GRKV + ++ EGVG    GE++++E+ +LE
Sbjct: 131 IEPAMLMAMARLNLPSIMVTGGPMLPGYFQGRKVAIPDMREGVGRWRRGELTDEEVLKLE 190

Query: 182 RCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQE 241
              CPGP SCA + TANTMAC  E LG++LPG +TAHAVSS K++IAR SG  ++ +V+E
Sbjct: 191 CSVCPGPGSCAMMGTANTMACFAEVLGVTLPGSSTAHAVSSEKKRIARQSGLEVLRLVRE 250

Query: 242 NLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPHI 301
           ++KP  IM++ AFENAV V  A+GGSTN  LH PAIAAE + ++I+L  FD LSR  P+I
Sbjct: 251 DIKPRDIMTRGAFENAVRVCAAVGGSTNLLLHAPAIAAEAE-IDISLKDFDTLSRTTPYI 309

Query: 302 ASISPAGEHMMLDLDRAGGIPAVLKTLEDHINRECVTCTGRTVQENIENVKVGHRDVIRP 361
             + PAG   +LDLD AGGIPAV K L   +N + V   G  +++      +   +VIRP
Sbjct: 310 CHLKPAGPFTLLDLDMAGGIPAVCKRLMPLLNPDEVNVLGMKIRDVAARAVINDDEVIRP 369

Query: 362 LDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGGRID 421
           LD+PV  EG  AIL G LAP G+ VKQ  V   +    G A+VF++E +   AI+ G+I 
Sbjct: 370 LDNPVKEEGSYAILFGTLAPDGACVKQTGVDLSVKYFRGRARVFDNEQDAEHAIYDGKIK 429

Query: 422 EGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVGHVSPE 480
            GDV+VIRYEGPKGGPGMREML+ T+A+ GMGL +  AL+TDGRFSG TRG CVGHVSPE
Sbjct: 430 PGDVVVIRYEGPKGGPGMREMLSATAALVGMGLGKECALVTDGRFSGSTRGLCVGHVSPE 489

Query: 481 AMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSVKGWLARYRKLAG 540
           A   GP+A V DGD+I ID+P R++++ +   E+E R ++     ++VKG LARY  L G
Sbjct: 490 AALGGPIAYVMDGDVIEIDLPGRRIDLKVDEAELERRRKTVKIREKAVKGVLARYSMLVG 549

Query: 541 SADTGAVLR 549
               GA LR
Sbjct: 550 KVSEGARLR 558


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1007
Number of extensions: 58
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 559
Length adjustment: 36
Effective length of query: 513
Effective length of database: 523
Effective search space:   268299
Effective search space used:   268299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_245735215.1 BM091_RS01820 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.1414.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1414.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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