Alignments for a candidate for trpD_1 in Thermodesulforhabdus norvegica DSM 9990

Align Aminodeoxychorismate/anthranilate synthase component 2; ADC synthase; ADCS; 4-amino-4-deoxychorismate synthase component 2; Aminodeoxychorismate synthase, glutamine amidotransferase component; EC 2.6.1.85; EC 4.1.3.27 (characterized)
to candidate WP_245735323.1 BM091_RS08485 aminodeoxychorismate/anthranilate synthase component II

Query= SwissProt::P28819
         (194 letters)



>NCBI__GCF_900114975.1:WP_245735323.1
          Length = 191

 Score =  199 bits (506), Expect = 3e-56
 Identities = 97/183 (53%), Positives = 126/183 (68%), Gaps = 2/183 (1%)

Query: 3   LMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGIS 62
           +MIDNYDSFTYNLVQ LG  G +++V R+D  T+ +I+ + PD + ISPGP  P  AGIS
Sbjct: 5   VMIDNYDSFTYNLVQLLGSCGADVIVFRHDETTVKDIDAIKPDAICISPGPRDPAHAGIS 64

Query: 63  LEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPL 122
            E ++ FAGK+PI GVCLG Q I +V+GG  V A   +HGKTS I+H G+ IF G+ +P 
Sbjct: 65  AEVVRTFAGKLPILGVCLGMQVINEVYGGKTVHAPLPVHGKTSMIKHTGRDIFSGIPSPF 124

Query: 123 VATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLR 182
            A RYHSL +K           A + +G +MA++H DLP+ GVQFHPES MT FGKE++ 
Sbjct: 125 KAARYHSLCIK--RCSDELVEMAWSDDGVVMAVKHKDLPVFGVQFHPESFMTEFGKEIIL 182

Query: 183 NFI 185
           NFI
Sbjct: 183 NFI 185


Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 145
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 191
Length adjustment: 20
Effective length of query: 174
Effective length of database: 171
Effective search space:    29754
Effective search space used:    29754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)

Align candidate WP_245735323.1 BM091_RS08485 (aminodeoxychorismate/anthranilate synthase component II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.20928.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20928.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.