Alignments for a candidate for carA in Haloechinothrix alba DSM 45207

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_245818640.1 CHB84_RS09195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_900188115.1:WP_245818640.1
          Length = 375

 Score =  307 bits (787), Expect = 3e-88
 Identities = 167/378 (44%), Positives = 219/378 (57%), Gaps = 21/378 (5%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           A LVLEDG+ F G   GA G A GEVVF T MTGYQE LTDPSY +QIV  T P IGN G
Sbjct: 9   AALVLEDGSVFRGLRYGAAGRAFGEVVFCTGMTGYQETLTDPSYHKQIVVQTAPQIGNTG 68

Query: 65  TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
            ND D+ESS++   G  +RD   + SN+R+   L + L+R  +V IA +DTR LTR +RE
Sbjct: 69  WNDEDDESSRIWVAGYAVRDPARVPSNWRSARSLETELERQGVVGIAQLDTRTLTRHIRE 128

Query: 125 KGAQNGCIIAGDNPDAA-LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPE 183
            GA    + +G     A   L +    P + G DLA EVTTAE Y               
Sbjct: 129 HGAMRAGVFSGTEVGTAEQMLARVTESPSMTGADLAGEVTTAEPY--------------V 174

Query: 184 AKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPG 243
            + +  + + V A D G K N  RM+  RG  + ++PA  S ++VL + P G+FLSNGPG
Sbjct: 175 VRPDGPVRYRVAAVDMGIKSNTPRMMAQRGIEVHVLPATASLDEVLAVEPHGVFLSNGPG 234

Query: 244 DPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKN 303
           DPA   +     +  L+  +P+FGIC G+Q+L  A G  T KM++GH G N PV D    
Sbjct: 235 DPATTTHVTELTRNVLQRQVPLFGICFGNQILGRALGLGTYKMRYGHRGMNIPVMDTATR 294

Query: 304 VVMITAQNHGFAVDE------ATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEAS 357
            + ITAQNHGFA++       ++      ++H    DGT++G+   D PAFS Q HPEA+
Sbjct: 295 RIAITAQNHGFALEGEPGARFSSPYGAATISHHCPNDGTVEGVRCLDVPAFSVQYHPEAA 354

Query: 358 PGPHDAAPLFDHFIELIE 375
            GPHDAA LFD F+ L+E
Sbjct: 355 AGPHDAAVLFDEFVSLME 372


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 403
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 375
Length adjustment: 30
Effective length of query: 352
Effective length of database: 345
Effective search space:   121440
Effective search space used:   121440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_245818640.1 CHB84_RS09195 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.18301.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18301.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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