Alignments for a candidate for lpd in Billgrantia desiderata SP1

Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate WP_254914259.1 BZY95_RS21050 dihydrolipoyl dehydrogenase

Query= BRENDA::P0A9P0
         (474 letters)



>NCBI__GCF_002151265.1:WP_254914259.1
          Length = 472

 Score =  592 bits (1525), Expect = e-173
 Identities = 300/473 (63%), Positives = 366/473 (77%), Gaps = 10/473 (2%)

Query: 9   VVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKA 68
           ++VLGAGP GYSAAFR ADLG++TV+VERY TLGGVCLNVGCIPSKALLHVA V + A A
Sbjct: 1   MLVLGAGPGGYSAAFRAADLGMKTVLVERYATLGGVCLNVGCIPSKALLHVAAVTDAANA 60

Query: 69  LAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEV- 127
           +A+HGI FG+PK D+DK+R WKEKV+++LTGGLAGMAK RKV+VV G+G F   + LEV 
Sbjct: 61  MADHGIAFGKPKIDLDKLRGWKEKVVDKLTGGLAGMAKARKVEVVRGVGTFLDPHHLEVA 120

Query: 128 -------EGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV 180
                  E    K VI F   IIAAGS+ ++LPFIP +DPR+ DST AL+L  +P+R+LV
Sbjct: 121 LTGGDGQEPTGAKQVIKFGKCIIAAGSQSVKLPFIP-DDPRVVDSTGALKLTTIPKRMLV 179

Query: 181 MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFN-LMLETKVT 239
           +GGGIIGLEM TVY  LG++IDVVEM D ++  AD+D+VKV+ K    +F+ +ML T+ T
Sbjct: 180 IGGGIIGLEMATVYSTLGTRIDVVEMLDGLMAGADRDLVKVWEKVNQPRFDKVMLNTRTT 239

Query: 240 AVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDK 299
           AV+A+++G+ V+ EG+ APAEPQ YD +L A+GR PNG  + A  AGV VD+RGFI  DK
Sbjct: 240 AVKAQKNGLKVSFEGEGAPAEPQLYDMILQAVGRSPNGHKIGAENAGVAVDERGFIATDK 299

Query: 300 QLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW 359
           Q+RTNV HIFAIGDIVGQPMLAHK VHE HVAAE  AG K +FD +  PS+AYT+PEVAW
Sbjct: 300 QMRTNVGHIFAIGDIVGQPMLAHKAVHEAHVAAEAAAGHKSFFDARQNPSVAYTDPEVAW 359

Query: 360 VGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGG 419
            G TE E K +GI Y  A FPWAASGRAIA+   +G TKLIFD+E+HR+IGGAIVGT  G
Sbjct: 360 AGKTEAECKAEGIKYGKAVFPWAASGRAIANGRDEGFTKLIFDEETHRIIGGAIVGTQAG 419

Query: 420 ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAK 472
           +L+GE+ LAIEMGCD  DI  TIH HPTL ESVG+AAE+FEG  TDLP  K +
Sbjct: 420 DLIGELCLAIEMGCDPVDIGKTIHPHPTLGESVGMAAELFEGVCTDLPPQKKR 472


Lambda     K      H
   0.317    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 729
Number of extensions: 30
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 472
Length adjustment: 33
Effective length of query: 441
Effective length of database: 439
Effective search space:   193599
Effective search space used:   193599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_254914259.1 BZY95_RS21050 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.4424.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4424.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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