Alignments for a candidate for ilvC in Geotalea uraniireducens Rf4

Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate WP_268741754.1 GURA_RS18935 ketol-acid reductoisomerase

Query= metacyc::MONOMER-18814
         (338 letters)



>NCBI__GCF_000016745.1:WP_268741754.1
          Length = 351

 Score =  473 bits (1218), Expect = e-138
 Identities = 228/338 (67%), Positives = 276/338 (81%)

Query: 1   MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAANAG 60
           MK++YDKD +LSL+KGK V IIGYGSQGHAHA NLKDSG++V VGL+   AS  KA  AG
Sbjct: 14  MKIYYDKDCNLSLLKGKKVAIIGYGSQGHAHANNLKDSGIDVVVGLKADSASVKKATEAG 73

Query: 61  LQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPRA 120
           L V   +EAVK AD++MILLPDE   DVY+ E+   +K+GA LAF HGFN+H+G ++PR 
Sbjct: 74  LTVLTTSEAVKIADIIMILLPDEIQGDVYREEIAPYVKQGAYLAFGHGFNIHFGQIVPRH 133

Query: 121 DLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIE 180
           D++VIM+APK PGH VR  YT+GGGVP LIA+H + SG +RD+AL+YA+ANGGG+AGIIE
Sbjct: 134 DINVIMVAPKGPGHLVRHEYTKGGGVPSLIAIHHDPSGNSRDVALAYASANGGGKAGIIE 193

Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240
           T+F+EETETDLFGEQAVLCGG   LI+AGFETLVEAGYAPEMAYFECLHE KLIVDLIYE
Sbjct: 194 TSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYAPEMAYFECLHETKLIVDLIYE 253

Query: 241 GGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAPT 300
           GGIANM YS+SN AEYG+   GPRV+T ETKK MK+ LT+IQ GE+A+ ++LENK   P 
Sbjct: 254 GGIANMRYSVSNTAEYGDLTRGPRVITGETKKEMKKILTEIQEGEFAREWMLENKVNNPR 313

Query: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338
             + RR   EHQIEEVGA+LR+MM WI K+K+VD++KN
Sbjct: 314 FNALRRKGTEHQIEEVGARLRSMMAWIGKSKIVDKTKN 351


Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 450
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 351
Length adjustment: 29
Effective length of query: 309
Effective length of database: 322
Effective search space:    99498
Effective search space used:    99498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_268741754.1 GURA_RS18935 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.23863.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.23863.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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