Alignments for a candidate for prs in Nitriliruptor alkaliphilus DSM 45188

Align ribose-phosphate diphosphokinase (EC 2.7.6.1) (characterized)
to candidate WP_281175529.1 NITAL_RS09755 ribose-phosphate diphosphokinase

Query= BRENDA::A0R3C8
         (326 letters)



>NCBI__GCF_000969705.1:WP_281175529.1
          Length = 330

 Score =  310 bits (793), Expect = 4e-89
 Identities = 165/323 (51%), Positives = 222/323 (68%), Gaps = 8/323 (2%)

Query: 9   RKNLMLFAGRAHPELADQVAKELDVAVTAQTARDFANGEIFVRFDESVRGCDAFVLQSHP 68
           +K +MLF+G ++PELA +V   L + V       F+NGE++ RF ESVRG DAFV+QSH 
Sbjct: 6   KKRMMLFSGSSYPELAREVCDHLGMRVGEVKLAQFSNGELYARFAESVRGTDAFVMQSHV 65

Query: 69  A-----PLNQWLMEQLIMIDALKRGSAKRITAILPFYPYARQDKKHRGREPISARLVADL 123
           +      +N ++ EQL+MIDALKR SAKR+ A++P+Y Y+R DKK   RE I+A+LVAD+
Sbjct: 66  SLPGGMTINDFIFEQLVMIDALKRASAKRVIAVIPYYGYSRSDKKALAREAIAAKLVADM 125

Query: 124 LKTAGADRIVSVDLHTDQIQGFFDGPVDHMRAQKLLTGYIGEHYADEDMVVVSPDSGRVR 183
            + AG DRI+SVDLHT QIQGF+D P D + A  LL  ++ E+ + ++ V+VSPD+GRVR
Sbjct: 126 YEAAGVDRIMSVDLHTGQIQGFYDDPFDALTALPLLVEWVKENTSPDERVIVSPDAGRVR 185

Query: 184 VAEKWADSLGGVPLAFIHKTRDPLVPNQVKSNRVVGDVKGKTCILTDDMIDTGGTIAGAV 243
           + EK+A  +G   +A +HK RDP   N   +  V+GDV GKT IL DDMIDT GTI GA 
Sbjct: 186 LTEKFAGHVGS-SIAILHKRRDPEQQNVSVTLDVIGDVAGKTAILVDDMIDTAGTICGAA 244

Query: 244 NLLREDGAKDVIIAATHGVLSDPAPQRLAECGAREVIVTNTLPITEDKR--FPQLTVLSI 301
            LL+E GA  VI  ATH + S PA +RL       V+VTNTLPI  ++R    +L VLSI
Sbjct: 245 KLLKERGAARVIALATHPLFSGPAAERLTNSDIERVVVTNTLPIPPERRPEGDKLVVLSI 304

Query: 302 APLLANTIRAVFENGSVTGLFDG 324
           AP++A+ +RAVFE+ SV+ +F G
Sbjct: 305 APIIASALRAVFEDESVSEIFRG 327


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 322
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 330
Length adjustment: 28
Effective length of query: 298
Effective length of database: 302
Effective search space:    89996
Effective search space used:    89996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_281175529.1 NITAL_RS09755 (ribose-phosphate diphosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.11118.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11118.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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