Alignments for a candidate for argG in Carboxydothermus pertinax Ug1

Align argininosuccinate synthase (EC 6.3.4.5) (characterized)
to candidate WP_305764301.1 cpu_RS12215 argininosuccinate synthase

Query= BRENDA::A4I066
         (418 letters)



>NCBI__GCF_001950255.1:WP_305764301.1
          Length = 403

 Score =  530 bits (1366), Expect = e-155
 Identities = 267/394 (67%), Positives = 315/394 (79%), Gaps = 3/394 (0%)

Query: 15  RVVLAYSGGLDTSVIIPWLKENYDYEVIACCANVGQGAGEIDGLEEKAKKSGASKLYLLD 74
           +VVLAYSGGLDTS+IIPWLKENY YEVIA  A+VGQG  E++ L EKA KSGA+K+Y+ D
Sbjct: 6   KVVLAYSGGLDTSIIIPWLKENYGYEVIAMVADVGQGE-ELEPLREKAIKSGAAKIYIED 64

Query: 75  LREEYVTDYIFPTLKAGATYEGKYMLGTSHARPLIAKHLVEVAHKEGAVAICHGATGKGN 134
           ++EE+V D++FP LKAGA YE KY+LGTS ARPLIAK LVE+A KEGAVA+ HGATGKGN
Sbjct: 65  VKEEFVRDFVFPMLKAGAVYENKYLLGTSVARPLIAKKLVEIAEKEGAVAVAHGATGKGN 124

Query: 135 DQVRFELAVMALDPSLKCVAPWREWNIKSREDAIDYAEAHGVPVPCTKSDLYSRDRNLWH 194
           DQVRFEL V AL+P LK +APWREW IKSREDAIDYAE  G+PVP TK   YS DRNLWH
Sbjct: 125 DQVRFELTVKALNPDLKIIAPWREWEIKSREDAIDYAEKRGIPVPVTKKQPYSMDRNLWH 184

Query: 195 ISHEGMDLEDPANEPAYARLLRLCNTVEKAPDEAEYVTVQFEKGIPVAVNGRKMSSVELV 254
           +SHEG  LEDPA EP    +L L N  EKAPD+ EYV ++F KG PVAVNG K+S VEL+
Sbjct: 185 LSHEGGILEDPAVEPP-ENVLLLTNPPEKAPDKPEYVEIEFVKGEPVAVNGEKLSPVELI 243

Query: 255 EELNALGGKHAIGIEDIVEDRLVGMKSRGVYETPAGTILYKALDMLESLCLDRDTQSFKR 314
            +LN LGGKH IGI D+VE+RLVGMKSRGVYETP GTIL  A   LESL LDR T  FK+
Sbjct: 244 FKLNELGGKHGIGIADMVENRLVGMKSRGVYETPGGTILTFAHRELESLTLDRQTMHFKQ 303

Query: 315 QSAVRFSELVYDGKWFTPLRESMSAMFDQMAETVTGEATLKLYKGNLVPAGAQSPYSLYN 374
             A++++EL+YDG WFTPLRE++ A  D+  ETVTG+  +KLYKGN+ PAG  SPYSLY 
Sbjct: 304 MVALKYAELIYDGLWFTPLREALEAFVDKTQETVTGKVRVKLYKGNIYPAGITSPYSLYV 363

Query: 375 KNIASFGDSQHLYNHHDAEGFIRLFGLPLRVRSM 408
           K++A+FG+  +LYN  DAEGFI LFGLPL+VR+M
Sbjct: 364 KDLATFGE-DNLYNQKDAEGFINLFGLPLKVRAM 396


Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 494
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 403
Length adjustment: 31
Effective length of query: 387
Effective length of database: 372
Effective search space:   143964
Effective search space used:   143964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_305764301.1 cpu_RS12215 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.7503.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7503.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.