Alignments for a candidate for asp-kinase in Nocardiopsis lucentensis DSM 44048

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_338045355.1 D471_RS0121390 aspartate kinase

Query= BRENDA::P26512
         (421 letters)



>NCBI__GCF_000341125.1:WP_338045355.1
          Length = 438

 Score =  280 bits (716), Expect = 6e-80
 Identities = 178/416 (42%), Positives = 238/416 (57%), Gaps = 25/416 (6%)

Query: 5   VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAR 64
           V K+GGSSL + ER+R  A R  A  ++G  + VV SA GDTTD LL  AA V      R
Sbjct: 32  VWKFGGSSLATTERVRAAARRAGAAYRSGGPLAVVVSAQGDTTDALLSRAADVGSTAAGR 91

Query: 65  EMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREA 124
           E+D LL  GE  S AL+A+A++ LG  A + TGSQ+G+L T RHG   +V V P R+   
Sbjct: 92  ELDQLLATGENASAALMAIALQGLGVPAVAVTGSQSGILATGRHGTGVVVAVDPERILRV 151

Query: 125 LDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP 184
           LD GK+ +VAGFQG N+E  DV TLGRGGSD++A ALAA L A  C+I +DV GVYTADP
Sbjct: 152 LDGGKVAVVAGFQGTNEE-GDVITLGRGGSDSSAAALAAGLGAHDCDILTDVAGVYTADP 210

Query: 185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDPGTLI--- 241
           RI P+AQ +  +  + M E+A  G++++  R+VE A   +V LRVRSS+   PGT I   
Sbjct: 211 RICPSAQLMPVVPNDVMAEMAFAGARVMHTRAVEIAALHDVELRVRSSFEQTPGTRIPLR 270

Query: 242 --AGSMEDIPVEEAVLTGVATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 299
              G +E +P   AV+     D   A+V +          A ++R LA   I +DM    
Sbjct: 271 GDGGMVETVPAAWAVV----HDLDVARVELSAGGAGGATVADLYRRLARRGITVDM---- 322

Query: 300 VSSVEDGTTDIT--FTCPRSD---GRRAMEILKKLQVQG-NWTNVLYDDQVGKVSLVGAG 353
           V S  DG   +T   T  RSD    RRA+E     +V G +   V+ D++V +VS+VG G
Sbjct: 323 VGSARDGRGGLTSGMTVRRSDVPEVRRALE-----RVAGPSRGRVVVDEEVARVSVVGTG 377

Query: 354 MKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDAAARALHEQFQLGG 409
           + S P  TA  +  LR   +    +STS+ RI V +       A R LH++F L G
Sbjct: 378 LLSRPEYTARMLSCLRTAGIEASALSTSQARICVTVPSASATLAVRRLHQEFGLDG 433


Lambda     K      H
   0.314    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 403
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 438
Length adjustment: 32
Effective length of query: 389
Effective length of database: 406
Effective search space:   157934
Effective search space used:   157934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)

Align candidate WP_338045355.1 D471_RS0121390 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.8582.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8582.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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