Alignments for a candidate for leuD in Ammonifex degensii KC4

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_340612390.1 ADEG_RS01155 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_000024605.1:WP_340612390.1
          Length = 162

 Score =  196 bits (497), Expect = 2e-55
 Identities = 89/160 (55%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 5   IKGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFG 64
           ++GRV+KFG+++DTD I+PARYL  T P ELA+  +  ADP F ++V+PGD+IV G NFG
Sbjct: 1   MEGRVFKFGDHIDTDLIIPARYLNTTDPAELAKHCLEDADPSFAREVRPGDVIVAGVNFG 60

Query: 65  CGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNL 124
           CGSSREHAPL +K AG++CV+A+SFARIFYRNA N+GLPL+EC   + ++  G  + V+L
Sbjct: 61  CGSSREHAPLAIKAAGVACVVAQSFARIFYRNAFNIGLPLLECPD-APRIPAGSRVRVDL 119

Query: 125 ETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKKKM 164
           ++G I+ L TGEV   + +P FM EI+ AGGL+PY++K++
Sbjct: 120 QSGRIEVLDTGEVFTARPIPPFMQEIIAAGGLIPYVEKRL 159


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 162
Length adjustment: 18
Effective length of query: 150
Effective length of database: 144
Effective search space:    21600
Effective search space used:    21600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_340612390.1 ADEG_RS01155 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02087 (3-isopropylmalate dehydratase, small subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.16248.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16248.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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