Alignments for a candidate for argG in Echinicola vietnamensis KMM 6221, DSM 17526

Align arginosuccinate synthetase (EC 6.3.4.5) (characterized)
to candidate Echvi_3846 Echvi_3846 argininosuccinate synthase

Query= reanno::Btheta:353286
         (402 letters)



>FitnessBrowser__Cola:Echvi_3846
          Length = 399

 Score =  464 bits (1195), Expect = e-135
 Identities = 222/389 (57%), Positives = 286/389 (73%)

Query: 6   KKVVVAFSGGLDTSFTVMYLAKEKGYEVYAACANTGGFSEEQLKTNEENAYKLGAVKYVT 65
           KKVV+A+SGGLDT+F  ++L++EKGYEV+A   NTGGFSEE+LKT EE A KLG   +  
Sbjct: 2   KKVVLAYSGGLDTTFCAIHLSQEKGYEVHAVLVNTGGFSEEELKTTEERAGKLGIASFKV 61

Query: 66  LDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERIFQALAIARYANEIGADAIAHGSTGA 125
           LDVTQ YY + +KY++FGNVL+N TYP+SVS+ERI QA A+A YA +IGA A+AHGSTGA
Sbjct: 62  LDVTQTYYNEVIKYLIFGNVLKNQTYPLSVSAERILQAKALAEYAKQIGAKAVAHGSTGA 121

Query: 126 GNDQIRFDMTFLVLAPNVEIITLTRDMALSRQEEIDYLNKHGFSADFTKLKYSYNVGLWG 185
           GNDQ+RFDM F  + P  EIIT  RD+ LSR+ EI++L KHG   +F K KYS N G+WG
Sbjct: 122 GNDQVRFDMIFQTILPEAEIITPIRDLQLSREAEIEFLKKHGVEMNFEKAKYSINKGIWG 181

Query: 186 TSICGGEILDSAQGLPETAYLKHVEKEGSEQLRLTFEKGELKAVNDETFDDPIQAIQKVE 245
           TS+ G E L S   LPE AY   + KE   Q+ L FE GEL  VN + F +P+ AI KV+
Sbjct: 182 TSVGGKETLTSGDTLPEEAYPTQLTKETPTQISLQFEAGELVGVNGQKFSNPVDAILKVQ 241

Query: 246 EIGAAYGIGRDMHVGDTIIGIKGRVGFEAAAPMLIIGAHRFLEKYTLSKWQQYWKDQVAN 305
            +   Y IGRD+HVGDTIIGIKGRVGFEAAAP++II AH+ LEK+TL+KWQ +WK+Q++ 
Sbjct: 242 ALADPYAIGRDIHVGDTIIGIKGRVGFEAAAPLIIIKAHQLLEKHTLTKWQTFWKNQLSE 301

Query: 306 WYGMFLHESQYLEPVMRDIEAMLQESQRNVNGTAILELRPLSFSTVGVESEDDLVKTKFG 365
           +YG  LHE  YL+PVMR++EA L ++Q+ V+G   + L+P  F  +G++S  DL+  KFG
Sbjct: 302 FYGNHLHEGHYLDPVMRNLEAFLADTQQFVSGEVKVALKPYQFQLIGIDSPHDLMSAKFG 361

Query: 366 EYGEMQKGWTAEDAKGFIKVTSTPLRVYY 394
            YGEM KG+TAED KGF K+      +Y+
Sbjct: 362 SYGEMNKGYTAEDVKGFTKILGNQTAIYH 390


Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 490
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 399
Length adjustment: 31
Effective length of query: 371
Effective length of database: 368
Effective search space:   136528
Effective search space used:   136528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_3846 Echvi_3846 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31407.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31407.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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