Alignments for a candidate for gatA in Echinicola vietnamensis KMM 6221, DSM 17526

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate Echvi_4078 Echvi_4078 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

Query= SwissProt::O06491
         (485 letters)



>FitnessBrowser__Cola:Echvi_4078
          Length = 475

 Score =  404 bits (1039), Expect = e-117
 Identities = 224/466 (48%), Positives = 301/466 (64%), Gaps = 5/466 (1%)

Query: 6   HKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGR 65
           H   E+K+ +  KE     +V    K IQ     + AF+ + E+ A   A+++D+ +   
Sbjct: 5   HSFDEIKRSLENKETDCKAIVHYYLKNIQT-KAHLNAFVEVYEQSALEQAEKVDQKIKAG 63

Query: 66  SEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMD 125
           +  G L GM IG+KD +         SSKILE F   + AT VQ+L D +A+ IG+LN D
Sbjct: 64  TA-GKLAGMVIGIKDVLCYADHEVNASSKILEGFQSQFTATAVQKLIDEDAIIIGRLNCD 122

Query: 126 EFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASF 185
           EF MGSS EN+ +    N  +   VPGGSSGGSA AV A     SLG+DTGGS+RQPA+F
Sbjct: 123 EFGMGSSNENTVHGKVLNALDEGRVPGGSSGGSAVAVQANLCTTSLGTDTGGSVRQPAAF 182

Query: 186 CGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDV 245
            G+VG+KPTY RVSR+GL+A+ASS D IG  +  V+DNA +L+ I+G D  DST +   V
Sbjct: 183 TGLVGIKPTYSRVSRFGLIAYASSFDTIGVFSTNVKDNALVLEVIAGQDDNDSTVSRKAV 242

Query: 246 PDFLSSLTGDIKGLKIAVPKEYL-GEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKY 304
           P +   L  D + +K+A  KE +  E +    +E  L  L  L+  G   EEV  P  +Y
Sbjct: 243 PHYSEQLQLD-RPVKVAYLKETIESEALQPAIKEHTLDILDKLKEEGHQVEEVDFPLLEY 301

Query: 305 ALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTF 364
            L TYY+L+++EAS+NL+RFDG++YGYRT NA NL  +YK TR+EGFG EVKRRIMLGTF
Sbjct: 302 VLPTYYILTTAEASSNLSRFDGVKYGYRTPNAHNLESMYKLTRSEGFGEEVKRRIMLGTF 361

Query: 365 ALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAN 424
            LS+ YYDAY+ KAQKVR LIK+  ED+  K+D IV PTTP+ AFK GE++ DP+ MY  
Sbjct: 362 VLSASYYDAYFTKAQKVRRLIKEFTEDLLNKFDYIVLPTTPSTAFKFGEHSDDPVAMYLE 421

Query: 425 DILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVA 469
           D+ T+  +++GVP IS+P G   +GLP+GLQ+I   F E+ +Y  A
Sbjct: 422 DLYTVQASVSGVPAISIPNGKDENGLPIGLQVITNSFKEAELYAFA 467


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 583
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 475
Length adjustment: 34
Effective length of query: 451
Effective length of database: 441
Effective search space:   198891
Effective search space used:   198891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_4078 Echvi_4078 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.15165.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15165.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.