Align glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7) (characterized)
to candidate Echvi_2206 Echvi_2206 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit
Query= metacyc::MONOMER-13957
(96 letters)
>FitnessBrowser__Cola:Echvi_2206
Length = 95
Score = 75.9 bits (185), Expect = 1e-19
Identities = 38/94 (40%), Positives = 52/94 (55%)
Query: 3 RISIEEVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNEVNTDNVEPTTHVLKMKNV 62
+I I +K +AHLARL E AK T + I+ + E L +V+T+ V P T + NV
Sbjct: 2 KIDINTLKKIAHLARLEFDENSAKKMTRDMTQILDWVEHLEQVDTEGVAPITTMSSEVNV 61
Query: 63 MREDEAGKGLPVEDVMKNAPDHKDGYIRVPSILD 96
+RED G L E +KNAP Y RVP +L+
Sbjct: 62 LREDAVGSHLSHEKGLKNAPQKDSDYFRVPKVLE 95
Lambda K H
0.312 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 95
Length adjustment: 10
Effective length of query: 86
Effective length of database: 85
Effective search space: 7310
Effective search space used: 7310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 39 (19.6 bits)
Align candidate Echvi_2206 Echvi_2206 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.18276.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18276.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.