Align chorismate synthase (EC 4.2.3.5) (characterized)
to candidate Echvi_1518 Echvi_1518 chorismate synthase
Query= BRENDA::B5AAU3 (442 letters) >FitnessBrowser__Cola:Echvi_1518 Length = 360 Score = 420 bits (1080), Expect = e-122 Identities = 211/352 (59%), Positives = 263/352 (74%), Gaps = 5/352 (1%) Query: 55 GNIFGDYFQVATYGESHGGGVGCVISGCPPRIPLTEEDMQGDLDRRRPGQSRITTPRKET 114 GN FG F+++T+GESHG G+G +I GCP +P+ E ++ +L RR+PGQS+ITT RKE Sbjct: 2 GNSFGKVFKISTFGESHGKGLGVIIDGCPAGLPIDEAFIRQELQRRKPGQSKITTQRKEE 61 Query: 115 DTCKILSGTYEGMTTGTPIHVFVPNTDQRGGDYTEMAKAYRPSHADLTYDLKYGVRSVQG 174 D C+ILSG +EG +TGTPI + + NTDQ+ DY+ +A YRPSHAD TY K+GVR +G Sbjct: 62 DECQILSGVFEGKSTGTPIAIVIMNTDQKSKDYSHIADKYRPSHADYTYQEKFGVRDYRG 121 Query: 175 GGRSSARETIGRVAAGAVAKKILKLKCGVEILAFVSKVHQVVLPEDAVDYETLTLDQIES 234 GGRSSARET RVAAGAVAK LK GVEI A+VS+ + L + Y+ L +IE Sbjct: 122 GGRSSARETAARVAAGAVAKLFLK-HIGVEINAYVSQAGHIKLDK---PYQELDFAEIEK 177 Query: 235 NICRCPDPEYAQKMIDAIDKVRINGNSIGGVVTCIARNVPRGLGSPVFDKLEALLAKAML 294 NI RCPDPE AQ MID ID++R N +++GGVV+C+A+NVP GLG PVFD+L A L K+ML Sbjct: 178 NIVRCPDPEVAQDMIDYIDEIRKNRDTVGGVVSCVAKNVPVGLGEPVFDRLHADLGKSML 237 Query: 295 SLPASKGFEIGSGFAGTDLTGSEHNDEFYMDEGGNVRTRTNRSGGVQGGISNGETIYFKV 354 S+ A KGFE GSGF G + GSEHND FYMD G VRT+TN SGG+QGGISNGE IYF+V Sbjct: 238 SINAVKGFEYGSGFEGVTMLGSEHNDAFYMD-GDTVRTKTNHSGGIQGGISNGEDIYFRV 296 Query: 355 AFKPTATIGKKQNTVTRDHEDIELLTRGRHDPCVVPRAVPMVETMAALVLMD 406 AFKP ATI K Q++V + + + + +GRHDPCVVPRAVP+VE MAALVL D Sbjct: 297 AFKPVATIMKDQDSVNQAGDQVTVSGKGRHDPCVVPRAVPIVEAMAALVLAD 348 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 457 Number of extensions: 18 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 442 Length of database: 360 Length adjustment: 31 Effective length of query: 411 Effective length of database: 329 Effective search space: 135219 Effective search space used: 135219 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Echvi_1518 Echvi_1518 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))
../bin/blast/fastacmd -i /tmp/list.26284.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26284.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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