Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate Echvi_2517 Echvi_2517 phosphoribosyl-ATP pyrophosphohydrolase
Query= metacyc::HISTCYCLOPRATPPHOS (203 letters) >FitnessBrowser__Cola:Echvi_2517 Length = 201 Score = 211 bits (536), Expect = 9e-60 Identities = 103/196 (52%), Positives = 140/196 (71%), Gaps = 1/196 (0%) Query: 9 ELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETS 68 ++D++K +GL+P I+Q A + VLMLGYMN EAL KT ESGKVTFFSRTKQRLWTKGETS Sbjct: 5 KIDFDKVNGLVPAIIQDATTNAVLMLGYMNEEALQKTQESGKVTFFSRTKQRLWTKGETS 64 Query: 69 GNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCFGD-TAHQWLFLYQLEQLLAERKS 127 GNF++V SI DCDNDTLL+ A+P+GP CH G +CF + + F+ QL ++ +RK+ Sbjct: 65 GNFMHVQSIKVDCDNDTLLIKADPVGPVCHTGADTCFDEKNTSKTAFIDQLRSIIKDRKN 124 Query: 128 ADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQDQ 187 + SYTA L+A G ++AQKVGEE VE + A + EA+DL++H LVLL+ + Sbjct: 125 NPTDKSYTASLFAKGINKVAQKVGEEAVEIVIEAKDDHKDLFMGEAADLLFHYLVLLEAK 184 Query: 188 GLDLTTVIENLRKRHQ 203 G +L V++ L +RH+ Sbjct: 185 GYELDEVMDVLIQRHK 200 Lambda K H 0.317 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 131 Number of extensions: 2 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 203 Length of database: 201 Length adjustment: 21 Effective length of query: 182 Effective length of database: 180 Effective search space: 32760 Effective search space used: 32760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 45 (21.9 bits)
Align candidate Echvi_2517 Echvi_2517 (phosphoribosyl-ATP pyrophosphohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.22358.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22358.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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