Alignments for a candidate for hisF in Echinicola vietnamensis KMM 6221, DSM 17526

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate Echvi_2516 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit

Query= BRENDA::Q9X0C6
         (253 letters)



>FitnessBrowser__Cola:Echvi_2516
          Length = 251

 Score =  284 bits (726), Expect = 1e-81
 Identities = 146/251 (58%), Positives = 183/251 (72%), Gaps = 1/251 (0%)

Query: 1   MLAKRIIACLDVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRK 60
           ML KRII CLD+K+GR VKG NF +LRD+GDPVEL K YS+ G DELVFLDITA+V+KRK
Sbjct: 1   MLTKRIIPCLDIKEGRTVKGVNFVDLRDAGDPVELAKVYSDEGADELVFLDITATVDKRK 60

Query: 61  TMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTF 120
           T+ ELV +VA+ I+IPFTVGGGI   E    L+  GADK+SIN+AAV+ P +I ++A  F
Sbjct: 61  TLAELVTRVAKAINIPFTVGGGISTVEDVKVLLNAGADKISINSAAVKRPEVIDEMAAEF 120

Query: 121 GSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS 180
           GSQ +VVAID + VDG  +V T+ G+K T +  + W  EV  RGAGEILLTS+D DGTK+
Sbjct: 121 GSQCIVVAIDTRNVDGVDLVHTHGGRKPTTLQTQAWAKEVADRGAGEILLTSMDHDGTKA 180

Query: 181 GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDVRELKE 239
           G+   +   +    T+P+IASGGAG M HF   F AG ADAALAAS+FHF+EI +  LK 
Sbjct: 181 GFADGLTSEISAALTIPVIASGGAGTMPHFKSVFTAGKADAALAASIFHFKEIGIPALKH 240

Query: 240 YLKKHGVNVRL 250
           YL   GV +R+
Sbjct: 241 YLAGEGVTMRI 251


Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 228
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 251
Length adjustment: 24
Effective length of query: 229
Effective length of database: 227
Effective search space:    51983
Effective search space used:    51983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate Echvi_2516 Echvi_2516 (imidazoleglycerol phosphate synthase, cyclase subunit)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.31096.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31096.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.