Align Branched-chain-amino-acid transaminase 1; BCAT 1; EC 2.6.1.42 (characterized)
to candidate Echvi_1626 Echvi_1626 branched-chain amino acid aminotransferase, group II
Query= SwissProt::O31461 (356 letters) >FitnessBrowser__Cola:Echvi_1626 Length = 355 Score = 276 bits (705), Expect = 8e-79 Identities = 147/332 (44%), Positives = 203/332 (61%), Gaps = 12/332 (3%) Query: 24 FGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRV 83 FG TD+M V Y +G WH I PY L L P + HYGQ VFEGLKAYR +D + Sbjct: 23 FGVEATDHMLVARYSDG-HWHSATIQPYEQLVLSPLAMCLHYGQTVFEGLKAYRQEDDTI 81 Query: 84 LLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIA 143 +FR ++ +R+N+S RM+MP + EEL + +LV+LE++W+ +G SLYIRPFVIA Sbjct: 82 SIFRLARHHERINQSLRRMAMPEIPEELFETGIRELVDLEQEWIRGGEGNSLYIRPFVIA 141 Query: 144 TEPSLGVKASRSYTFMIVLSPVGSYYGDDQLKPVRIYVEDEYVRAVNGGVGFAKTAGNYA 203 TE LGV S Y FM+V +P+ +YY KP+++ VE Y RAV GGVG AK GNY Sbjct: 142 TEARLGVSISTDYLFMVVCTPMAAYYA----KPLKVKVERHYTRAVPGGVGAAKNGGNYG 197 Query: 204 ASLQAQRKANELGYDQVLWLDAIEKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRA 263 A+ A + G+DQV+W DA + ++VEE G+MN+ F+I+G +TP ++L+GVTR Sbjct: 198 AAYYPAHLAQQAGFDQVIWTDARDHQFVEESGTMNLMFIIDGVLLTPPAGETVLAGVTRD 257 Query: 264 SAIELIRSWGIPVREERISIDEVYAASARGELTEVFGTGTAAVVTPVGELNIHG---KTV 320 S + + R G PV E IS+ E+ A + G+ E FG GTAAVV P+ + I G + Sbjct: 258 SLLSIARDMGWPVEERPISLKELEEAFSTGKKVEAFGAGTAAVVAPLELIQIDGQDFRPY 317 Query: 321 IVGDGQIGDLSKKLYETITDIQLGKVKGPFNW 352 I D Q+ L +L + I+ GK K P+ W Sbjct: 318 IAEDAQMYQLKARL----SAIRAGKEKDPYAW 345 Lambda K H 0.317 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 334 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 356 Length of database: 355 Length adjustment: 29 Effective length of query: 327 Effective length of database: 326 Effective search space: 106602 Effective search space used: 106602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Echvi_1626 Echvi_1626 (branched-chain amino acid aminotransferase, group II)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.9620.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9620.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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