Alignments for a candidate for leuB in Echinicola vietnamensis KMM 6221, DSM 17526

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate Echvi_2062 Echvi_2062 3-isopropylmalate dehydrogenase

Query= BRENDA::P54354
         (353 letters)



>FitnessBrowser__Cola:Echvi_2062
          Length = 353

 Score =  416 bits (1070), Expect = e-121
 Identities = 210/352 (59%), Positives = 263/352 (74%), Gaps = 5/352 (1%)

Query: 5   IAVLAGDGIGPEISVQGVEVMSAVCEKFGHKVNYEYAICGADAIDKVGDPFPEETYRVCK 64
           IA+L GDGIGPE+  Q V+V+ AV +KFGH + ++ A+ GA AID  G+P+P+ET+ +C 
Sbjct: 3   IALLPGDGIGPEVIEQTVKVVKAVGKKFGHTITFKEAVVGAAAIDATGNPYPDETHEICL 62

Query: 65  NADAVLFSAVGDPKFDNDPTAKVRPEQGLLAMRKKLGLFANIRPVQTFKCLVHKSPLRAE 124
            ADAVLF A+GDPK+DNDP AKVRPEQGLLAMRKKLGLF+N+RP  TF  L+HKSPL+ E
Sbjct: 63  QADAVLFGAIGDPKYDNDPKAKVRPEQGLLAMRKKLGLFSNVRPTFTFPSLIHKSPLKKE 122

Query: 125 LVEGADFLCIRELTGGMYFGEKYQDND---KAYDTNMYTRPEIERILKVGFEYAMKRRKH 181
            +EG D + +RELTGG+YFGE    N+   KA+DTN+YT+ EI R+ ++GFE+A KRRK 
Sbjct: 123 RIEGTDLVFLRELTGGIYFGEPRGRNEQGTKAFDTNVYTKEEITRLARMGFEFAQKRRKL 182

Query: 182 LTVVDKANVLASSRLWRQIAQEMAPQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTF 241
           LT VDKANVLA+SRLWR+  QE+ P+YP+V  +Y FVD  AM++IQ PK +DV++TEN F
Sbjct: 183 LTCVDKANVLATSRLWRETVQELEPEYPDVKVEYEFVDAVAMRLIQWPKAYDVLITENLF 242

Query: 242 GDILTDEGSVISGSMGLLPSASTGESTPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFE 301
           GDILTDE SVISGSMGL+PSAS G    +FEPIHGS+PQA G +IANPLA +LS AM+FE
Sbjct: 243 GDILTDEASVISGSMGLMPSASLGTDVKLFEPIHGSYPQAAGKDIANPLATVLSAAMMFE 302

Query: 302 Y-FDCKAEGALIRKAVDASLDANVRTPEIQVEGGEKFGTKEVGAWIVDYIRK 352
           Y FD K E   I   V+ SL   V T +I  E  +   T EVG W+   I K
Sbjct: 303 YAFDLKDEAKAISDVVNLSLAEGVVTEDI-AEESKPSKTSEVGDWLAAQILK 353


Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 432
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 353
Length adjustment: 29
Effective length of query: 324
Effective length of database: 324
Effective search space:   104976
Effective search space used:   104976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_2062 Echvi_2062 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.18118.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18118.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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