Alignments for a candidate for ilvD in Echinicola vietnamensis KMM 6221, DSM 17526

Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate Echvi_2055 Echvi_2055 dihydroxy-acid dehydratase

Query= BRENDA::A0A481UJA7
         (614 letters)



>FitnessBrowser__Cola:Echvi_2055
          Length = 561

 Score =  644 bits (1660), Expect = 0.0
 Identities = 311/557 (55%), Positives = 414/557 (74%), Gaps = 2/557 (0%)

Query: 59  LNKYSSRITEPKSQGGSQAILHGVGLSDEDLNKPQIGISSVWYEGNTCNMHLLRLSEAVK 118
           L KYS  I++ +    + A+L+  G++D+ + +P +G++S  YE N CNMHL   +E +K
Sbjct: 5   LKKYSWEISDNEENPAAMAMLYATGITDKKMKQPFVGVASCGYESNPCNMHLNSFAEDIK 64

Query: 119 EGVKEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPG 178
               +A + GF FNTIG+SD  SMGT GM YSL SR++IADSIE+ +    +DG ++IPG
Sbjct: 65  ASTNQADLSGFIFNTIGISDGQSMGTSGMRYSLPSREVIADSIESFILGHSFDGVVTIPG 124

Query: 179 CDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHYNGHSYDIISAFQAYGEYVNGSISDEDRK 238
           CDKNMPG +M M R+NRP IMV+GGTI+ G+Y G   +I+SAF+AYG+ +NG ISDED  
Sbjct: 125 CDKNMPGVVMGMLRVNRPGIMVFGGTIRSGNYKGEKLNIVSAFEAYGKKINGQISDEDYM 184

Query: 239 NVVHNSCPGAGACGGMYTANTMASAIEAMGMCLPYSSSIPAENPLKLDECRLAGKYLLEL 298
            V+ N+CPGAGACGGMYTANTM+SAIEAMG+ LP+SSS PA +  K +EC+  GKY+ +L
Sbjct: 185 GVIKNACPGAGACGGMYTANTMSSAIEAMGLSLPFSSSYPATSKEKREECKNIGKYIKQL 244

Query: 299 LKMDLKPQNIITPQSLRNAMVVVMALGGSTNAVLHLIPIARSVGLELTLEDFQKVSDEVP 358
           L +D+KP++IIT +SL NA+ V +ALGGSTNA LH++ IAR+ G++ TLEDF++++ E P
Sbjct: 245 LALDIKPKDIITKKSLENAVRVTVALGGSTNAALHILAIARTAGIDFTLEDFKRINAETP 304

Query: 359 FLADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGKTLAENVQNCPPLSEG 418
            L D KPSGK++MED++++GG PA L+Y L  G L GDCLTVTGKT+AEN+++  P+   
Sbjct: 305 VLGDFKPSGKFMMEDLYEMGGLPAFLKYFLNEGLLHGDCLTVTGKTMAENLEDIDPVKPS 364

Query: 419 QD-IIRPLENPIKKTGHIQILQGNLAPEGSVAKITGKEGLYFSGPALVFEGEEAMLAAIS 477
           ++ +I PL+NPIK +GH+ +L GNLAPEG+VAKI+GKEG  F+G A VF+ E +  AA+ 
Sbjct: 365 KESVIHPLDNPIKPSGHLCVLHGNLAPEGAVAKISGKEGKSFTGTAKVFDDEPSANAAMK 424

Query: 478 ENPMNFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVV 537
              +  KG VVVIR  GPKGGPGMPEML PTS I+GAGLG D AL+TDGRFSGG+HGFVV
Sbjct: 425 NKEIQ-KGDVVVIRYVGPKGGPGMPEMLKPTSIIIGAGLGSDVALITDGRFSGGTHGFVV 483

Query: 538 GHICPEAQEGGPIGLVRNGDIIRIDVRERRIDVDVTDQEMEERRKNWTPPPYKATCGVLY 597
           GH+ PEA  GGPIGL+++GD+I ID     I VDV++ E  ER+KNW         G L 
Sbjct: 484 GHVTPEAYLGGPIGLLKDGDVITIDAESLEIRVDVSEAEFAERKKNWKNKDLSHLQGTLK 543

Query: 598 KYIKNVQSASRGCVTDE 614
           KY++ V +AS GCVTD+
Sbjct: 544 KYVQLVSTASEGCVTDK 560


Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1060
Number of extensions: 42
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 561
Length adjustment: 37
Effective length of query: 577
Effective length of database: 524
Effective search space:   302348
Effective search space used:   302348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate Echvi_2055 Echvi_2055 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.31776.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31776.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.