Alignments for a candidate for leuD in Echinicola vietnamensis KMM 6221, DSM 17526

Align 3-isopropylmalate dehydratase small subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate Echvi_2060 Echvi_2060 3-isopropylmalate dehydratase, small subunit

Query= uniprot:A0A1X9Z766
         (195 letters)



>FitnessBrowser__Cola:Echvi_2060
          Length = 197

 Score =  265 bits (676), Expect = 5e-76
 Identities = 126/193 (65%), Positives = 155/193 (80%)

Query: 3   KFTKLTSAVVPLNIENIDTDQIIPARFLKATTREGFGENLFRDWRYENDNQPKADFVMNN 62
           KF  L S VVPL  EN+DTDQIIPARFLKAT R+GFG+NLFRDWRY+++  PKADFV+N+
Sbjct: 5   KFNILKSTVVPLPTENVDTDQIIPARFLKATERKGFGDNLFRDWRYDSEGNPKADFVLND 64

Query: 63  PTYSGQVLVAGKNFGCGSSREHAAWAIQDAGFDAVISSFFADIFKGNALNNGLLPIQVSD 122
            TYSG+VLVAGKNFG GSSREHAAWAI D GF  V+SSFFADIFK NALN G+LP+ V+ 
Sbjct: 65  ATYSGKVLVAGKNFGSGSSREHAAWAIYDYGFRCVVSSFFADIFKNNALNIGILPVTVTP 124

Query: 123 EFLAQIFKAVDNNPKSALEVDLENQTVTIVETGAQESFEINPYKKSCLINGYDDIDFILN 182
           EFL +IF  V+ +P + +EVD+E QT+T++ TG  ESF+IN YKK  + NG+DDID++LN
Sbjct: 125 EFLEEIFAEVEKDPATEVEVDIEKQTITLLSTGNSESFDINSYKKQNMQNGFDDIDYLLN 184

Query: 183 QKQLIEEFEEGRR 195
            K  I EFE+ R+
Sbjct: 185 MKDQIVEFEKTRK 197


Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 202
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 197
Length adjustment: 20
Effective length of query: 175
Effective length of database: 177
Effective search space:    30975
Effective search space used:    30975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate Echvi_2060 Echvi_2060 (3-isopropylmalate dehydratase, small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.10402.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.