Alignments for a candidate for proB in Echinicola vietnamensis KMM 6221, DSM 17526

Align Glutamate 5-kinase; EC 2.7.2.11; Gamma-glutamyl kinase; GK (uncharacterized)
to candidate Echvi_2634 Echvi_2634 glutamate 5-kinase

Query= curated2:Q3IP73
         (284 letters)



>FitnessBrowser__Cola:Echvi_2634
          Length = 268

 Score =  152 bits (383), Expect = 1e-41
 Identities = 94/253 (37%), Positives = 144/253 (56%), Gaps = 10/253 (3%)

Query: 28  KRVVVKAGTNSLTDEESNLDDDKLDKLVDDIADLLERDKDVLLVSSGAVGAGI----GRV 83
           KR+V+K GTN +T+ ++ + +  L K+VD IA L ER    +LVSSG+V AG      +V
Sbjct: 14  KRIVIKVGTNVMTNRDNRIVNTVLRKMVDQIAILYERGIMSVLVSSGSVIAGKEVLGSKV 73

Query: 84  GYGSRTVEESQALSTVGQSHLMRRYTESFERYDRKVAQILLTQQDLENPERFTNFCNTVE 143
           G   + +   Q  S VGQ  +MR Y   F+ Y  + AQ+L T++D +  +   N  N  E
Sbjct: 74  GIKDKIIRR-QVFSAVGQPRMMRHYYNIFQDYGMRCAQVLATKRDFDPGKHRENMINCYE 132

Query: 144 TLLEWDIVPIINENDAVATQEIRIGDNDMLSSSVAVGVDADLLVTLTDVDAVYTGNPKED 203
            LL   I+PI NE+DAV+       DND L+S VA    AD+L+ LTD D +Y G+P +D
Sbjct: 133 GLLSEGIIPIANEDDAVSLSMSTFTDNDELASLVAELTKADMLILLTDTDGLYNGHP-DD 191

Query: 204 PDAERIEAVGENYDQIQGLVEESSSSDF---GGIRTKVEGARNVSEYGIPAIIAGSAEPD 260
            + ERI  VG + ++++  ++ES+  +    GG+++K+  A+  +   IP  IA     +
Sbjct: 192 ENTERIAHVGTD-EKVEHFIQESTKGEAEGRGGMKSKLNVAKEAARKNIPTYIANGNVDN 250

Query: 261 VLQQIATGKSVGT 273
           ++  I  GK VGT
Sbjct: 251 MILDIVDGKEVGT 263


Lambda     K      H
   0.310    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 170
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 268
Length adjustment: 25
Effective length of query: 259
Effective length of database: 243
Effective search space:    62937
Effective search space used:    62937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_2634 Echvi_2634 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.21255.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21255.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.