Alignments for a candidate for asp-kinase in Echinicola vietnamensis KMM 6221, DSM 17526

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate Echvi_1218 Echvi_1218 aspartate kinase

Query= BRENDA::P08660
         (449 letters)



>FitnessBrowser__Cola:Echvi_1218
          Length = 439

 Score =  249 bits (637), Expect = 1e-70
 Identities = 148/448 (33%), Positives = 255/448 (56%), Gaps = 16/448 (3%)

Query: 6   VSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGERF---E 62
           + KFGGTSV   + M++  D++  D   +++VLSA +G TN LV + E L  G++    E
Sbjct: 3   IMKFGGTSVGKPERMHQVKDLITRDNERKIIVLSALSGTTNALVGIGEALAEGKKDLAKE 62

Query: 63  KLDAIRNIQFAILERLRYPNVIREEIERLL-ENITVLAEAAALATSPALTDELVSHGELM 121
           ++D +        + L      R++ E+++ E+   L     ++ + A+  ++++ GEL+
Sbjct: 63  RIDTLHAHYQEFYKALLESEAGRKKAEKIIKEHFEFLNIILKISFNEAINRDILAQGELL 122

Query: 122 STLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVIT 181
           ST LF  +L+E+D+ A +    + M  ++    +EP++A +++     L     + L IT
Sbjct: 123 STKLFYTLLQEKDIPAIFLPALEYMSIDEN---SEPEVAKISDRLKAILKNYDKDALFIT 179

Query: 182 QGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRID 241
           QG+I   ++     L RGGSDYTA+L+  A+ AS V+IWTD+ G++  DPRVV   + I 
Sbjct: 180 QGYICKNHRNEVDNLKRGGSDYTASLIGAAIKASVVEIWTDIDGMHNNDPRVVDKTRPIA 239

Query: 242 EIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRA 301
           +++F EAAE+A FGAK+LHPA++ PA   +IPV + ++  P A GT +    E     +A
Sbjct: 240 QLSFDEAAELAYFGAKILHPASIWPAQTYNIPVKLLNTMQPEAPGTTI-TAEETGKGVKA 298

Query: 302 LALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTST 361
           +A +     + + S  ML + GFL +VF I  ++   +D+ITTSEV+V++T+D       
Sbjct: 299 IAAKDGIIAVKIKSSRMLLAYGFLRKVFEIFEKYKTPIDMITTSEVAVSVTID------- 351

Query: 362 GDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYG 421
            D    + ++MEL      E++    +V + GN +++  G+ KEV   L+ F +RM+ YG
Sbjct: 352 -DDTHLKEIIMELEKFGNTEIDYKQTIVCVAGNMIAENTGMIKEVVVALQDFPVRMVSYG 410

Query: 422 ASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
            S +N+  LV  +   + +Q+L+  LF+
Sbjct: 411 GSRNNVSILVDTKYKNEALQRLNDELFQ 438


Lambda     K      H
   0.320    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 378
Number of extensions: 14
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 439
Length adjustment: 32
Effective length of query: 417
Effective length of database: 407
Effective search space:   169719
Effective search space used:   169719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_1218 Echvi_1218 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.19370.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19370.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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