Alignments for a candidate for trpD_1 in Echinicola vietnamensis KMM 6221, DSM 17526

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate Echvi_0658 Echvi_0658 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Query= SwissProt::P26922
         (196 letters)



>FitnessBrowser__Cola:Echvi_0658
          Length = 196

 Score =  139 bits (351), Expect = 3e-38
 Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 11/189 (5%)

Query: 1   MLLLIDNYDSFTYNLVHYLGELGAELDVRRNDSLTVEEAMALRPEGIVLSPGPCDPDKAG 60
           MLLLIDN+DSF++ L  Y  + G +L + RND+  +   M  + EG+VLSPGP  P KAG
Sbjct: 1   MLLLIDNFDSFSHILADYFRQAGFDLHIVRNDT-PLAVLMEGKYEGLVLSPGPETPAKAG 59

Query: 61  ICLPLIDAAAKAAVPLMGVCLGHQAIGQPFGGTVVRAPVPMHGKV----DRMFHQGRGVL 116
               + +      +P++GVCLGHQ IG  FG  +V    P+HGKV     R+ H    +L
Sbjct: 60  NLQEIFEYFHDK-LPVLGVCLGHQCIGTFFGAKLVTGARPVHGKVYSVTKRLDHP---ML 115

Query: 117 KDLPSPFRATRYHSLIVERATLPACLEVTGETEDGLIMALSHRELPIHGVQFHPESIESE 176
             LP  F  TRYHSL  E   LP CL+    TE G +MA+ H+ LPI G+Q+HPE+  SE
Sbjct: 116 NGLPERFLVTRYHSL--ELKDLPDCLQPLLYTEQGALMAMVHQTLPIVGIQYHPEAYLSE 173

Query: 177 HGHKILENF 185
           +G ++++N+
Sbjct: 174 YGLQVIQNW 182


Lambda     K      H
   0.321    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 154
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 196
Length adjustment: 20
Effective length of query: 176
Effective length of database: 176
Effective search space:    30976
Effective search space used:    30976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate Echvi_0658 Echvi_0658 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.30340.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30340.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.