Alignments for a candidate for trpD_1 in Echinicola vietnamensis KMM 6221, DSM 17526

Align Anthranilate synthase component II (characterized, see rationale)
to candidate Echvi_2506 Echvi_2506 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Query= uniprot:Q8AAD4_BACTN
         (188 letters)



>FitnessBrowser__Cola:Echvi_2506
          Length = 189

 Score =  237 bits (604), Expect = 1e-67
 Identities = 108/188 (57%), Positives = 149/188 (79%), Gaps = 1/188 (0%)

Query: 1   MKILLLDNYDSFTYNLLHAVKELG-ATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEA 59
           MKIL+LDNYDSFTYNL++ V+ELG   +++V RND+I +++V  +DKI+LSPGPG+P +A
Sbjct: 1   MKILVLDNYDSFTYNLVYIVRELGYGAEMDVFRNDKIKVEDVAAYDKILLSPGPGVPADA 60

Query: 60  GLLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGL 119
           G++  ++K+YA  K ILGVCLGHQAIGEAFG+ L NL EV HGV + + + Q+D+LFEG+
Sbjct: 61  GIMPELLKQYAKEKDILGVCLGHQAIGEAFGSGLNNLTEVVHGVASEVKVFQRDLLFEGV 120

Query: 120 GKEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGK 179
                +GRYHSWV+      + LEITA++ +GQIMA+RHK+Y V G+QFHPESVLT  GK
Sbjct: 121 PDNFKIGRYHSWVIDESTLSDDLEITAKTPDGQIMAVRHKSYKVRGLQFHPESVLTEHGK 180

Query: 180 EIIKNFLN 187
           +I++N++N
Sbjct: 181 QIVQNWIN 188


Lambda     K      H
   0.319    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 166
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 189
Length adjustment: 20
Effective length of query: 168
Effective length of database: 169
Effective search space:    28392
Effective search space used:    28392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)

Align candidate Echvi_2506 Echvi_2506 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.21322.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21322.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.