Alignments for a candidate for ilvE in Echinicola vietnamensis KMM 6221, DSM 17526

Align Branched-chain-amino-acid transaminase 1; BCAT 1; EC 2.6.1.42 (characterized)
to candidate Echvi_1626 Echvi_1626 branched-chain amino acid aminotransferase, group II

Query= SwissProt::O31461
         (356 letters)



>FitnessBrowser__Cola:Echvi_1626
          Length = 355

 Score =  276 bits (705), Expect = 8e-79
 Identities = 147/332 (44%), Positives = 203/332 (61%), Gaps = 12/332 (3%)

Query: 24  FGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRV 83
           FG   TD+M V  Y +G  WH   I PY  L L P +   HYGQ VFEGLKAYR +D  +
Sbjct: 23  FGVEATDHMLVARYSDG-HWHSATIQPYEQLVLSPLAMCLHYGQTVFEGLKAYRQEDDTI 81

Query: 84  LLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIA 143
            +FR  ++ +R+N+S  RM+MP + EEL    + +LV+LE++W+   +G SLYIRPFVIA
Sbjct: 82  SIFRLARHHERINQSLRRMAMPEIPEELFETGIRELVDLEQEWIRGGEGNSLYIRPFVIA 141

Query: 144 TEPSLGVKASRSYTFMIVLSPVGSYYGDDQLKPVRIYVEDEYVRAVNGGVGFAKTAGNYA 203
           TE  LGV  S  Y FM+V +P+ +YY     KP+++ VE  Y RAV GGVG AK  GNY 
Sbjct: 142 TEARLGVSISTDYLFMVVCTPMAAYYA----KPLKVKVERHYTRAVPGGVGAAKNGGNYG 197

Query: 204 ASLQAQRKANELGYDQVLWLDAIEKKYVEEVGSMNIFFVINGEAVTPALSGSILSGVTRA 263
           A+      A + G+DQV+W DA + ++VEE G+MN+ F+I+G  +TP    ++L+GVTR 
Sbjct: 198 AAYYPAHLAQQAGFDQVIWTDARDHQFVEESGTMNLMFIIDGVLLTPPAGETVLAGVTRD 257

Query: 264 SAIELIRSWGIPVREERISIDEVYAASARGELTEVFGTGTAAVVTPVGELNIHG---KTV 320
           S + + R  G PV E  IS+ E+  A + G+  E FG GTAAVV P+  + I G   +  
Sbjct: 258 SLLSIARDMGWPVEERPISLKELEEAFSTGKKVEAFGAGTAAVVAPLELIQIDGQDFRPY 317

Query: 321 IVGDGQIGDLSKKLYETITDIQLGKVKGPFNW 352
           I  D Q+  L  +L    + I+ GK K P+ W
Sbjct: 318 IAEDAQMYQLKARL----SAIRAGKEKDPYAW 345


Lambda     K      H
   0.317    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 334
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 355
Length adjustment: 29
Effective length of query: 327
Effective length of database: 326
Effective search space:   106602
Effective search space used:   106602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_1626 Echvi_1626 (branched-chain amino acid aminotransferase, group II)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.27594.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27594.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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