Alignments for a candidate for argH in Dyella japonica UNC79MFTsu3.2

Align arginosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate N515DRAFT_3770 N515DRAFT_3770 argininosuccinate lyase

Query= reanno::Dyella79:N515DRAFT_3770
         (433 letters)



>FitnessBrowser__Dyella79:N515DRAFT_3770
          Length = 433

 Score =  848 bits (2190), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)

Query: 1   MTQPLWQKSGIQIDARIMRFLAGDDVVLDREFFLHDITASKAHVEGLAKIGVVSADEAAA 60
           MTQPLWQKSGIQIDARIMRFLAGDDVVLDREFFLHDITASKAHVEGLAKIGVVSADEAAA
Sbjct: 1   MTQPLWQKSGIQIDARIMRFLAGDDVVLDREFFLHDITASKAHVEGLAKIGVVSADEAAA 60

Query: 61  LKRELDALAADFSAGDFVLDESYEDGHSAIEARLTERLGDAGRRVHTGRSRNDQILVATR 120
           LKRELDALAADFSAGDFVLDESYEDGHSAIEARLTERLGDAGRRVHTGRSRNDQILVATR
Sbjct: 61  LKRELDALAADFSAGDFVLDESYEDGHSAIEARLTERLGDAGRRVHTGRSRNDQILVATR 120

Query: 121 LWLKDQLAVLETHCRAIAEVCLERAAQPALPLPGYTHIQRAVVSSTAMWFAGFAEGFIDN 180
           LWLKDQLAVLETHCRAIAEVCLERAAQPALPLPGYTHIQRAVVSSTAMWFAGFAEGFIDN
Sbjct: 121 LWLKDQLAVLETHCRAIAEVCLERAAQPALPLPGYTHIQRAVVSSTAMWFAGFAEGFIDN 180

Query: 181 TLRARQTAALIDCNPLGTAAGYGVNLPLDREHTTQALGFARMQVSPVYAQLSRGKFEMAV 240
           TLRARQTAALIDCNPLGTAAGYGVNLPLDREHTTQALGFARMQVSPVYAQLSRGKFEMAV
Sbjct: 181 TLRARQTAALIDCNPLGTAAGYGVNLPLDREHTTQALGFARMQVSPVYAQLSRGKFEMAV 240

Query: 241 LEAIAAALLDVRRLAWDLSLFTTAEFGFVKLPSEYTTGSSIMPNKRNPDVVELLRASYAS 300
           LEAIAAALLDVRRLAWDLSLFTTAEFGFVKLPSEYTTGSSIMPNKRNPDVVELLRASYAS
Sbjct: 241 LEAIAAALLDVRRLAWDLSLFTTAEFGFVKLPSEYTTGSSIMPNKRNPDVVELLRASYAS 300

Query: 301 VAAARTEIEQLLSLPSGYQRDLQFSKGSLFHGCRHGLAALELVPDLLARMEWHEPAMRAA 360
           VAAARTEIEQLLSLPSGYQRDLQFSKGSLFHGCRHGLAALELVPDLLARMEWHEPAMRAA
Sbjct: 301 VAAARTEIEQLLSLPSGYQRDLQFSKGSLFHGCRHGLAALELVPDLLARMEWHEPAMRAA 360

Query: 361 IEPAMYATDVAIEQAAAGVPFRDAYRAAADAAASAGAGRTPEGSLAARVSPGAGHDLRLD 420
           IEPAMYATDVAIEQAAAGVPFRDAYRAAADAAASAGAGRTPEGSLAARVSPGAGHDLRLD
Sbjct: 361 IEPAMYATDVAIEQAAAGVPFRDAYRAAADAAASAGAGRTPEGSLAARVSPGAGHDLRLD 420

Query: 421 ELKARLAALTPGH 433
           ELKARLAALTPGH
Sbjct: 421 ELKARLAALTPGH 433


Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 793
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 433
Length adjustment: 32
Effective length of query: 401
Effective length of database: 401
Effective search space:   160801
Effective search space used:   160801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate N515DRAFT_3770 N515DRAFT_3770 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.28948.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28948.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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